Detail information of AT2G05310_circ_g.1


General Information
CircRNA Name AT2G05310_circ_g.1
ID in PlantcircBase ath_circ_012844
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1933848-1933919  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene AT2G05310
Parent gene annotation Expressed protein
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues leaf
Exon boundary   Yes-No
Splicing signals   TA-AC
Number of exons covered AT2G05310.2:1
AT2G05310.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATCTTTAGGCTTCACTTCTCCATCTCCTCCACCTtgttctggttcttcatctttggtaatga
acttcttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTTCTGGTTCTTCATCTTTGGTAATGAACTTCTTCTTATCTTTAGGCTTCACTTCTCCATCTC
CTCCACCT
Conservation Information
Conserved circRNAs NA
PMCS 0.208331019
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017