Detail information of Os10g0537500_circ_igg.1


General Information
CircRNA Name Os10g0537500_circ_igg.1
ID in PlantcircBase osa_circ_007840
Alias Os10circ08899/Os_ciR515
Organism Oryza sativa
Position chr10: 20940114-20940686  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRI, SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 2/67/6/3
Tissues leaf and panicle/root/root/seed
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACCTGATGTATATTTACCATTATATCACAAATAATAGGATGGTGTACCAGATGAAGCACGTAT
CAAGCATTGACCTTCAGCTCCCTGGCCAGTTTAGCCcttcagctttggtgctattcatcctaag
gaaactgccaccgaaacgggggatcacacaatatcatccaattcattagagcagccctggcagg
gacagaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 211
Transcript exons: 20940114-20940686
CTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTGCCACCGAAACGGGGGATCACACAATATCA
TCCAATTCATTAGAGCAGCCCTTTGTTCTTCTTCACAGTGTTTTCCCTCTGTACACATCACTGC
AACTGTGCCTCGCATATTTGTGCATTTTTACCAGATGAAGCACGTATCAAGCATTGACCTTCAG
CTCCCTGGCCAGTTTAGCC

Genomic sequence CTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTGCCACCGAAACGGGGGATCACACAATATCA
TCCAATTCATTAGAGCAGCCCTGGCAGGGACAGAAGAGGTTTTCTTATGAGTAGTCTATACAGC
GTGGTAAATACAGAAAAGGCAATGTGAAAGATACCACACTTGCTTTCGAGCTTGCCCCAGCTTT
TGTAAGAGGAAGCCTTTAGAATCTCAGGGTACCATCGTGTGTAAAAATGCAATCTGGTGTTGTT
ACAGATTTAGAAAGTGTTAACTTATATATATATATATACCTTTGTTCTTCTTCACAGTGTTTTC
CCTCTGTACACATCACTGCAACTGTGCCTCGCATATTTGTGCATTTTTACCTGGCGAAAAGACT
GCATTTTCAGTACTTGTTTCACCCAAGCTCGAGGAGTCAGTTTCTCCTCTGAGGCAGACCTGCA
GATTACCACACCTGCAAAACACAACTACCTGATGTATATTTACCATTATATCACAAATAATAGG
ATGGTGTACCAGATGAAGCACGTATCAAGCATTGACCTTCAGCTCCCTGGCCAGTTTAGCC
Conservation Information
Conserved circRNAs osi_circ_008653
PMCS 0.349294037
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA