Detail information of BGIOSGA031757_circ_igg.1


General Information
CircRNA Name BGIOSGA031757_circ_igg.1
ID in PlantcircBase osi_circ_008479
Alias Chr10:18628799_18630301(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15552839-15554341  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCACTTGCTGCCAGATTAGGCCAAGAAAGAAACACAGCAGCCCCTGCAGCTAGCAACATCCTC
CGCCTAGAGCTCTCTAGTTCTCTCTTGATGCTTTGCccatttgcaatggcaattgcaccaagcg
catgcctggtgaaatttggagcttgagctgtgaactcaaaagtgtagtaagttcttccgtcaac
gtcattct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATTTGCAATGGCAATTGCACCAAGCGCATGCCTGGTGAAATTTGGAGCTTGAGCTGTGAACT
CAAAAGTGTAGTAAGTTCTTCCGTCAACGTCATTCTGTGCAATGAGACAGATCTTATGAGTTTA
ATAATCAAGGAGTAATAGATATTTCCCTTTGCAAAAGGGAACATGGAGAATAGTCAACAAGTTG
TCATTTGATTCCTATAACCCAGAGAGAAGTACTAGATAGCCTGCAATTTTTTATGAAGGTTTGA
CATTACAATGTGTTTATTTTTCTCTAGGTGATATGTATACTAGCGAAGTGTTACAACTTTTAGA
ATATGGAATAAAAAGATCACTTCAAAAACAACAAAAAAGGACAACACAATGCAGCAAATGCATA
TCATTTAGGGATAAGAAATAACCTTTTTGATCTTAGATTAAGGTCCGGTATATATACATACAAA
TAAAATAACCTGCAATGCTACGGGATGATAAAATAGATTGCTGCAAAAGTAGGCAGATGCAGTT
TCATTTCAACTGGAAATAACATAAGAGATAATAAAGGGGTGTCAAACAAAAATACATTTATGGC
ATTCTCATATTCTGTGTATTTGTGTTTTATGATAAATGTAGATATGATCACTTTTACTCCACAT
TAGTACTACTTCACATGGCAATTTCAATAAATGGTGGCTGATAGCCTGTTGGCTCTACTTACTA
GAAATACATAAGTTGGACAATTCAACATGAATGAGGTGGATTAGAAATTCTGAATTGCATTATT
GCGTGACATCTTGCACGAACAATTGGATAAAAAAGGCACCTCTTTTGCTTCAATTAACTTTGTC
TTTTGCGTAGGTGCGGCAAGAACCTTTCGTATAAGAGCTTCAGCAACCTAAATACAAATCATGG
TGGATAAGATTTTGCACCTTCTCACCATACAACTGCAGAGACATGACCAAATGTTTGACGAAAA
GAAGAAAAAAAAATAAACCTGATCTGGAGGACCAAGTTCACGGATGTCTTGCTTGCTGGTTGGA
ATTGTGTTGACGCTCACACTTTCCAAAGGCTCTATGACATCTTTGTAAACCTTATCTTGCCCTT
GAACAACCACTTCCTGGATAAGTACAAACTCACAATGAAATGAAGGAATCGAAATGCAACCTTA
CATCATGCGAACCTTTAGCAATGATGGTTTATTACCTGCCATCCAAATGGGTAGAGGAAGGAGT
ATCCATCCTTCTTGTCGGTTACAGGTAAGAACCCTTTCTTAGCCTCTGCTGCGTCTATACCACA
TCAGAATGGCACTCAGGCACATGGTATTGACCAAACAAACCATTCACAAGTCTGAGTGCTACTA
CAGTCAAGTATTATCACACTTGTACCACTCTACACTAATATATTAATATGGAAGGACAACTCAC
TTGCTGCCAGATTAGGCCAAGAAAGAAACACAGCAGCCCCTGCAGCTAGCAACATCCTCCGCCT
AGAGCTCTCTAGTTCTCTCTTGATGCTTTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021