Plant Circular RNA Database

Detail information of 2_circ_ag.3

			
						 General Information
					
						CircRNA Name
						2_circ_ag.3
					
						ID in PlantcircBase
						ath_circ_015223
					
						Alias
						2:11817644-11819254
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 11817644-11819254  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT2G27710_circ_g.1 2_circ_ag.2 						
					
						Support reads
						18/16
					
						Tissues
						root;flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	2_circ_ag.3
ID in PlantcircBase	ath_circ_015223
Alias	2:11817644-11819254
Organism	Arabidpsis thaliana
Position	chr2: 11817644-11819254 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT2G27710_circ_g.1 2_circ_ag.2
Support reads	18/16
Tissues	root;flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTTGCTTCTGCTACATCTGGAGGTGGAGGAGGTGGTGGTGCTCCTGCTGCTGAGTCCAAGAAA
GAAGAGAAGAAAGAAGAGAAAGAAGAATCCGATGATgacatgggtttcagtctattcgagtaag
ctggtagtagcatgaaaagtccggttttgttgtcctcttttaatattgtaaccttttgaaatct
atatgttg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GACATGGGTTTCAGTCTATTCGAGTAAGCTGGTAGTAGCATGAAAAGTCCGGTTTTGTTGTCCT
CTTTTAATATTGTAACCTTTTGAAATCTATATGTTGTTGTTGTTTAGTTTGTATTCGATCATCT
TTTTTAGACATTGCTGAAATTCTCAAGAGTTTTTGACCCGAATGTCATTTGCACTTTGTTGTTA
GCATTTCTGCTTCTATCTCAATCGCCTTTGTCACTCTGGAGTTTTTAGTAGCCAACAAAAGCAT
TGGTCCTAGTCATGGTCTTAAATCTTGACTCGAATGGTGATGAGATACCTCTAGCCTTGACTTT
GCTAATGATACGTTGTCGTTCATTTGGAACCTAGATTCAGATTCGGCTTACGTATGACTTCAAG
AATAGTATTATTGTAAGAAAAGGATAAAAAAAAAATTCTAGTCTTGAATTGTTCCCCCTTCAAT
GCCGTCCAATATGTAAATACATCATAATTCGTATGAGAAAATAACTAGACTATGCTAAAACTTT
GACACCACAAATTTATTAGTAACTTGCAAAACATATCACTTGTCAACTACATATACCGAGAAAT
GCCATACGCAGGCGATGTTTCGGAAACAACAGGTGTAGAGTTGAAGCTACTTTTGATGTCATCG
ACCAAGAAGGTGCTATAGAAGACGAGGTTAGAGGTGAAATCCCATCCATCAAACAAAATAAAAC
TAGAGAATTGTATAATCTGGTCGTTCTCTTCTCAACATCAATATTACCCGTCAATCGAAATATT
GAGCCCATATAAATATGGGCTTGAAAGAACTGGGCCTAAATAAAATTTTAAATTCGGAGATACA
TTGATAAGATTAAAAACCCTAAGCGTATATAAATCATATAGTTTTCATTTTTTCGTACTTCTTC
TCCATCGCCGTCTAAAAACCCTAATCTCACTCCGCCTCCTGCGAGATCCATCAACACTTCCGCA
GTAAGCGCCTCCATTTCCATTTCTCTCTCCTTCTTCTCCTACGTAATCGTACTATGTTTGATTT
TTGATCTGTTTTTGTTTTTCTTCAGAAAATGAAGGTTGTTGCTGCGTTTTTGCTTGCCGTCTTG
AGCGGGAAAGCTTCCCCAACCACTGGCGATATCAAGGATATTCTTGGATCAGGTTCGTGACTTT
GATTTGAGCATTGGAATGTATACATGATTATTCTAGTAGTGAGAATTTGTTTAACTTGAAATGT
TATTGGAACTAGGAATTGTATATGTTTGCTGGAAATGAACAGTGTGATGCAATAAGAGGCATTA
TGGTGTTGGTATTGGACTGTGTTGTTATAGGTGATTGCTGTAATTGTGGTGGAGGAAGAATTGA
TGGAGTGTGGCAATTGTTATGTTTGATTTTGCAGTTGGTGCTGAGACAGAGGATTCTCAGATTG
AGCTTTTGTTGAAGGAAGTGAAAGGGAAAGACTTGGCTGAGCTAATTGCTGCTGGAAGGGAGAA
GTTAGCTTCAGTACCATCAGGAGGTGGTGGTGGTGTTGCGGTTGCTTCTGCTACATCTGGAGGT
GGAGGAGGTGGTGGTGCTCCTGCTGCTGAGTCCAAGAAAGAAGAGAAGAAAGAAGAGAAAGAAG
AATCCGATGAT
						
					

			
		

Sequences
Splice junction sequence	GGTTGCTTCTGCTACATCTGGAGGTGGAGGAGGTGGTGGTGCTCCTGCTGCTGAGTCCAAGAAA GAAGAGAAGAAAGAAGAGAAAGAAGAATCCGATGATgacatgggtttcagtctattcgagtaag ctggtagtagcatgaaaagtccggttttgttgtcctcttttaatattgtaaccttttgaaatct atatgttg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GACATGGGTTTCAGTCTATTCGAGTAAGCTGGTAGTAGCATGAAAAGTCCGGTTTTGTTGTCCT CTTTTAATATTGTAACCTTTTGAAATCTATATGTTGTTGTTGTTTAGTTTGTATTCGATCATCT TTTTTAGACATTGCTGAAATTCTCAAGAGTTTTTGACCCGAATGTCATTTGCACTTTGTTGTTA GCATTTCTGCTTCTATCTCAATCGCCTTTGTCACTCTGGAGTTTTTAGTAGCCAACAAAAGCAT TGGTCCTAGTCATGGTCTTAAATCTTGACTCGAATGGTGATGAGATACCTCTAGCCTTGACTTT GCTAATGATACGTTGTCGTTCATTTGGAACCTAGATTCAGATTCGGCTTACGTATGACTTCAAG AATAGTATTATTGTAAGAAAAGGATAAAAAAAAAATTCTAGTCTTGAATTGTTCCCCCTTCAAT GCCGTCCAATATGTAAATACATCATAATTCGTATGAGAAAATAACTAGACTATGCTAAAACTTT GACACCACAAATTTATTAGTAACTTGCAAAACATATCACTTGTCAACTACATATACCGAGAAAT GCCATACGCAGGCGATGTTTCGGAAACAACAGGTGTAGAGTTGAAGCTACTTTTGATGTCATCG ACCAAGAAGGTGCTATAGAAGACGAGGTTAGAGGTGAAATCCCATCCATCAAACAAAATAAAAC TAGAGAATTGTATAATCTGGTCGTTCTCTTCTCAACATCAATATTACCCGTCAATCGAAATATT GAGCCCATATAAATATGGGCTTGAAAGAACTGGGCCTAAATAAAATTTTAAATTCGGAGATACA TTGATAAGATTAAAAACCCTAAGCGTATATAAATCATATAGTTTTCATTTTTTCGTACTTCTTC TCCATCGCCGTCTAAAAACCCTAATCTCACTCCGCCTCCTGCGAGATCCATCAACACTTCCGCA GTAAGCGCCTCCATTTCCATTTCTCTCTCCTTCTTCTCCTACGTAATCGTACTATGTTTGATTT TTGATCTGTTTTTGTTTTTCTTCAGAAAATGAAGGTTGTTGCTGCGTTTTTGCTTGCCGTCTTG AGCGGGAAAGCTTCCCCAACCACTGGCGATATCAAGGATATTCTTGGATCAGGTTCGTGACTTT GATTTGAGCATTGGAATGTATACATGATTATTCTAGTAGTGAGAATTTGTTTAACTTGAAATGT TATTGGAACTAGGAATTGTATATGTTTGCTGGAAATGAACAGTGTGATGCAATAAGAGGCATTA TGGTGTTGGTATTGGACTGTGTTGTTATAGGTGATTGCTGTAATTGTGGTGGAGGAAGAATTGA TGGAGTGTGGCAATTGTTATGTTTGATTTTGCAGTTGGTGCTGAGACAGAGGATTCTCAGATTG AGCTTTTGTTGAAGGAAGTGAAAGGGAAAGACTTGGCTGAGCTAATTGCTGCTGGAAGGGAGAA GTTAGCTTCAGTACCATCAGGAGGTGGTGGTGGTGTTGCGGTTGCTTCTGCTACATCTGGAGGT GGAGGAGGTGGTGGTGCTCCTGCTGCTGAGTCCAAGAAAGAAGAGAAGAAAGAAGAGAAAGAAG AATCCGATGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.725496976

Conservation Information
Conserved circRNAs	NA
PMCS	0.725496976

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 2_circ_ag.3

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