Detail information of AT2G04360_circ_g.2


General Information
CircRNA Name AT2G04360_circ_g.2
ID in PlantcircBase ath_circ_012779
Alias 2:1520235-1520394
Organism Arabidpsis thaliana
Position chr2: 1520235-1520394  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04360
Parent gene annotation unknown protein
Parent gene strand -
Alternative splicing AT2G04360_circ_g.1
Support reads 2/1/1/1/2
Tissues seedling;root;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04360.1:1
AT2G04360.4:1
AT2G04360.3:1
AT2G04360.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCACAGTGCAAAATAAGGTAACAAAGCATAAACACCACCGAAAAAGGAAAGCACAACGAAAGG
CCAAGCCGGTGTTTTAcccagcagttacttttgattccagaacattcaaaggccattgtctcag
ctcagtctctgaaacaggaggagaaggaggat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 160
Transcript exons: 1520235-1520394
CCCAGCAGTTACTTTTGATTCCAGAACATTCAAAGGCCATTGTCTCAGCTCAGTCTCTGAAACA
GGAGGAGAAGGAGGATTCCACAGTGCAAAATAAGGTAACAAAGCATAAACACCACCGAAAAAGG
AAAGCACAACGAAAGGCCAAGCCGGTGTTTTA

Genomic sequence CCCAGCAGTTACTTTTGATTCCAGAACATTCAAAGGCCATTGTCTCAGCTCAGTCTCTGAAACA
GGAGGAGAAGGAGGATTCCACAGTGCAAAATAAGGTAACAAAGCATAAACACCACCGAAAAAGG
AAAGCACAACGAAAGGCCAAGCCGGTGTTTTA
Conservation Information
Conserved circRNAs NA
PMCS 0.380287168
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020