Plant Circular RNA Database

Detail information of Os07g0191700_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os07g0191700_circ_g.2
					
						ID in PlantcircBase
						osa_circ_033098
					
						Alias
						Os_ciR11268
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 4958281-4961240  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os07g0191700						
					
						Parent gene annotation
						
							Similar to AT.I.24-9 protein (Fragment). (Os07t0191700-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0191700-01:8

General Information
CircRNA Name	Os07g0191700_circ_g.2
ID in PlantcircBase	osa_circ_033098
Alias	Os_ciR11268
Organism	Oryza sativa
Position	chr7: 4958281-4961240 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os07g0191700
Parent gene annotation	Similar to AT.I.24-9 protein (Fragment). (Os07t0191700-01)
Parent gene strand	+
Alternative splicing	NA
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0191700-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGAGCCATCAAAAGGTGCATATGCTAAAGAATGGGCACAGTGGGAGAAAAGGTTGCGCCAGGTT
TTGTTTGCGAACAAAGACTATCTCAACTCTATCCAGgtatacctggctgtgcaaagtcagctct
atgtaaggagatattaaccactcctggtggcctaggtgataatcgtcctcttcatagtttgatg
ggagatct

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTATACCTGGCTGTGCAAAGTCAGCTCTATGTAAGGAGATATTAACCACTCCTGGTGGCCTAGG
TGATAATCGTCCTCTTCATAGTTTGATGGGAGATCTTATTAAAGGTATGGAACATTAGGCACGT
TCAGTAACTTTTTTGTGGTAGTGTTCATTGGGCCAAACAACACTTCAACAGTAAGGCATTTTGC
TTAGATCTTTTCCACCTACACAATGAAAAAAGGAATTCATGCAATTTACATGTATGAAAATACA
CCTGTAGGATGTAGTCATTCATTTGATCTTTATATCTTTCTGTTGTTCACAGACATAATAATTG
ACTTGCTCCCACTAAGTTGTGTCTGAGCATTACTATACGCTGCTTTGGGATAGCAACTGATATG
AACTTTTCTTTTGGCGTTATATTATATTTCGAAGGACTATGCCAGTACATTGTGCTAGTACCAT
TTTGCTTTCCATTGCTAAAATTGTTTTTAGGTTTGGTTTTTAAATGTAAAGGTTCTGTACTTCT
GTTTCAGTAATTGATGAAAGCATAGATGTATAACATGTTAGAAGTTAGAACATGTGCCTCCATA
GAAGTCTGTATGAAAAGATGATCTCATATCTCCATTGTTATTAAAGGCAATTACATTACAATAT
GTTACTCCCTCCATCCCAAAATGTTTGGCGCCGTTGACTTTTTTTAAAAATGTTTGACTGTTTG
TCTTATTTAAAAAATTTAAGTAAGTATTAATTCTTTTCTTATCATTTGATTTATTGTTAAATAT
ACTTTTATGTATACATATAGTTTTACACATTTCACAAAGGTTTTTGAATAAGACGAACGGTCAA
ACATGTTTAAAAAAGTCAACAGCGTCAAACATTTAGGGAATGAGGGAGTTTTTTTTTTTTGTGT
ACAACCTGTCTTTTATGTACTGTTTATAGATGACCATATTTTTGCATAAGATGTTGCAGGTGCA
CATACATGTTCTAGCATGTTTTTTCATCCACAATATTTTTTAAGTCCATAAGTATAAAACTATA
ACTTCGGTGCTTATAAGCTTCTCGTGTGAGCATGTTTTGACCATTTTATTAATTGTCCTTACAG
GAAGGTACTGGCAAAAAGTTGCGGATGAACGAAAAAAGAAACCATTTCGAATAACCCTTGCTGA
CAAAAATGCACCAAACGAAGAAGTGTGGAGGCAGGTAAGGTTACTATATTTGATGGGTTGACAA
AACCTGCGTTGTCTCTTTTTCCCTTGTTTAGTCCTATAGGTTTTATAACAAACTGAGAGATCAT
CTCTTCCAGATTGAGGATATGTGTAGGACAACAAAGGCTGCTGCTGTTCCTGTTATTCCTGATT
CTGAAGGTAACCTATGCTCCATTGTTTCTCATCTTTAGTTGTTCCTTTTCCTGACTACACAAGG
AGTTCAAGACAAGAAAAACGTCAAATAAATATTTGGAAAGAAGTCACTGTTTGTATTTATGACA
GAAATGCTCAAATGTAAGTATCTGAAGATCGCAAGTTAGAGCACATGTAGGCTTGAATACTGGT
AGCTTGGGTTATAGCTATTTATAGATGGGCCAATAGCCACTATATGCAAGGAAATGCATAAAAC
ACCCAACATGGCACTCTTAACAAAAATCTCAAGAATGTGCTACTTTGACAGTACAAAGTTGTAC
AATGTCTTTTCTGACTTCATGCAATAATAGGTTAAGTTTATATATGTTGAGGAGATTGTGCAGG
TTCTAAACTGATTTGTTCATCTACTTATGTTTATCTATGAGTGTTGATGCCCTTTTTTTTTGTA
TCCTGAAGTTATATTTATTTTTCTTTCTTGTTTTGAATATGTAGGCACAGATTCAAATCCATTT
TCTCTTGATGCTCTTGCTGTCTTCATGTTTCGTGTACTTCAACGGGACAATCATCCTGTATGTT
GGTGATATCTCTTAGACAGAAATGTATATGGTTACTGTTAAATTGGCTAATCACTGTTATTGTA
ATCTGGCTAACATTTTATAATTTCGTCTAAAGGGTAATCTGGACAAGGCATCACCAAATGCTGG
CTATGTTCTGTTAATGTTTTACAACCTCTACGATGGCAAGGTATGTGCATTTCATGAGAACATT
TCTTCTCCCTTTTGAAATGTGCCATTCATTGAAGAAGCATGCACTTCAGAGTCGAAGAGAATTT
GAAAGTGAACTATATGAGCGTTTTGGATCCTTGGTTAAGATGCCACTATTAAAGCCAGATAGGT
ATGATTTTTCACATATAGCTATACTGCATCCCCATTTTACGAATCATCATGTTTAATACATGTA
AAGTAATTTTTTGCAAACTTCCATATTATGTGCGGAAAACACAAACACGGTGTGATGGGGCTGG
TTTTCAATTCTTTTTTTTTCCTGCTTTGTGCAGTTGGGAGTGTCTTACATGTCGTAAATTTGTT
TGCTATATTCACTAAAAATGGTACTTGAATTTTACTAATTGCAGAGCCCCGCTGCCTGATGAAG
TGAAAGCTATTTTAGATGAAGGGATCAGCTTGTTCAGACTGCATCAAAGCAGACATGGAAGGTA
TGGAATTGCCAACCAGTTTTGATGTTTTACCTCCGTCATTCTAAGTATATTGTGAACAATGAAT
CTCATGATGAGTTGTGGAGGAAACCCTATTGATATGAAAAGGACCCTGTTCCATCATACTTCTC
AAATGCTTAGTGAGTGTGACATGCCATACTTAGGAAGTTGAGCCACAAACACATTTGATTTCAA
TTCCACTGTTGCTATGCCTGACATTGGTGGCATAATCAGTATTGTATTTTAAATTTCATAATTC
CTCATATACTACCTAATTTTCACAAAACAATGCCAAATCAGAGCGGAGCCATCAAAAGGTGCAT
ATGCTAAAGAATGGGCACAGTGGGAGAAAAGGTTGCGCCAGGTTTTGTTTGCGAACAAAGACTA
TCTCAACTCTATCCAG
						
					

			
		

Sequences
Splice junction sequence	GGAGCCATCAAAAGGTGCATATGCTAAAGAATGGGCACAGTGGGAGAAAAGGTTGCGCCAGGTT TTGTTTGCGAACAAAGACTATCTCAACTCTATCCAGgtatacctggctgtgcaaagtcagctct atgtaaggagatattaaccactcctggtggcctaggtgataatcgtcctcttcatagtttgatg ggagatct
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTATACCTGGCTGTGCAAAGTCAGCTCTATGTAAGGAGATATTAACCACTCCTGGTGGCCTAGG TGATAATCGTCCTCTTCATAGTTTGATGGGAGATCTTATTAAAGGTATGGAACATTAGGCACGT TCAGTAACTTTTTTGTGGTAGTGTTCATTGGGCCAAACAACACTTCAACAGTAAGGCATTTTGC TTAGATCTTTTCCACCTACACAATGAAAAAAGGAATTCATGCAATTTACATGTATGAAAATACA CCTGTAGGATGTAGTCATTCATTTGATCTTTATATCTTTCTGTTGTTCACAGACATAATAATTG ACTTGCTCCCACTAAGTTGTGTCTGAGCATTACTATACGCTGCTTTGGGATAGCAACTGATATG AACTTTTCTTTTGGCGTTATATTATATTTCGAAGGACTATGCCAGTACATTGTGCTAGTACCAT TTTGCTTTCCATTGCTAAAATTGTTTTTAGGTTTGGTTTTTAAATGTAAAGGTTCTGTACTTCT GTTTCAGTAATTGATGAAAGCATAGATGTATAACATGTTAGAAGTTAGAACATGTGCCTCCATA GAAGTCTGTATGAAAAGATGATCTCATATCTCCATTGTTATTAAAGGCAATTACATTACAATAT GTTACTCCCTCCATCCCAAAATGTTTGGCGCCGTTGACTTTTTTTAAAAATGTTTGACTGTTTG TCTTATTTAAAAAATTTAAGTAAGTATTAATTCTTTTCTTATCATTTGATTTATTGTTAAATAT ACTTTTATGTATACATATAGTTTTACACATTTCACAAAGGTTTTTGAATAAGACGAACGGTCAA ACATGTTTAAAAAAGTCAACAGCGTCAAACATTTAGGGAATGAGGGAGTTTTTTTTTTTTGTGT ACAACCTGTCTTTTATGTACTGTTTATAGATGACCATATTTTTGCATAAGATGTTGCAGGTGCA CATACATGTTCTAGCATGTTTTTTCATCCACAATATTTTTTAAGTCCATAAGTATAAAACTATA ACTTCGGTGCTTATAAGCTTCTCGTGTGAGCATGTTTTGACCATTTTATTAATTGTCCTTACAG GAAGGTACTGGCAAAAAGTTGCGGATGAACGAAAAAAGAAACCATTTCGAATAACCCTTGCTGA CAAAAATGCACCAAACGAAGAAGTGTGGAGGCAGGTAAGGTTACTATATTTGATGGGTTGACAA AACCTGCGTTGTCTCTTTTTCCCTTGTTTAGTCCTATAGGTTTTATAACAAACTGAGAGATCAT CTCTTCCAGATTGAGGATATGTGTAGGACAACAAAGGCTGCTGCTGTTCCTGTTATTCCTGATT CTGAAGGTAACCTATGCTCCATTGTTTCTCATCTTTAGTTGTTCCTTTTCCTGACTACACAAGG AGTTCAAGACAAGAAAAACGTCAAATAAATATTTGGAAAGAAGTCACTGTTTGTATTTATGACA GAAATGCTCAAATGTAAGTATCTGAAGATCGCAAGTTAGAGCACATGTAGGCTTGAATACTGGT AGCTTGGGTTATAGCTATTTATAGATGGGCCAATAGCCACTATATGCAAGGAAATGCATAAAAC ACCCAACATGGCACTCTTAACAAAAATCTCAAGAATGTGCTACTTTGACAGTACAAAGTTGTAC AATGTCTTTTCTGACTTCATGCAATAATAGGTTAAGTTTATATATGTTGAGGAGATTGTGCAGG TTCTAAACTGATTTGTTCATCTACTTATGTTTATCTATGAGTGTTGATGCCCTTTTTTTTTGTA TCCTGAAGTTATATTTATTTTTCTTTCTTGTTTTGAATATGTAGGCACAGATTCAAATCCATTT TCTCTTGATGCTCTTGCTGTCTTCATGTTTCGTGTACTTCAACGGGACAATCATCCTGTATGTT GGTGATATCTCTTAGACAGAAATGTATATGGTTACTGTTAAATTGGCTAATCACTGTTATTGTA ATCTGGCTAACATTTTATAATTTCGTCTAAAGGGTAATCTGGACAAGGCATCACCAAATGCTGG CTATGTTCTGTTAATGTTTTACAACCTCTACGATGGCAAGGTATGTGCATTTCATGAGAACATT TCTTCTCCCTTTTGAAATGTGCCATTCATTGAAGAAGCATGCACTTCAGAGTCGAAGAGAATTT GAAAGTGAACTATATGAGCGTTTTGGATCCTTGGTTAAGATGCCACTATTAAAGCCAGATAGGT ATGATTTTTCACATATAGCTATACTGCATCCCCATTTTACGAATCATCATGTTTAATACATGTA AAGTAATTTTTTGCAAACTTCCATATTATGTGCGGAAAACACAAACACGGTGTGATGGGGCTGG TTTTCAATTCTTTTTTTTTCCTGCTTTGTGCAGTTGGGAGTGTCTTACATGTCGTAAATTTGTT TGCTATATTCACTAAAAATGGTACTTGAATTTTACTAATTGCAGAGCCCCGCTGCCTGATGAAG TGAAAGCTATTTTAGATGAAGGGATCAGCTTGTTCAGACTGCATCAAAGCAGACATGGAAGGTA TGGAATTGCCAACCAGTTTTGATGTTTTACCTCCGTCATTCTAAGTATATTGTGAACAATGAAT CTCATGATGAGTTGTGGAGGAAACCCTATTGATATGAAAAGGACCCTGTTCCATCATACTTCTC AAATGCTTAGTGAGTGTGACATGCCATACTTAGGAAGTTGAGCCACAAACACATTTGATTTCAA TTCCACTGTTGCTATGCCTGACATTGGTGGCATAATCAGTATTGTATTTTAAATTTCATAATTC CTCATATACTACCTAATTTTCACAAAACAATGCCAAATCAGAGCGGAGCCATCAAAAGGTGCAT ATGCTAAAGAATGGGCACAGTGGGAGAAAAGGTTGCGCCAGGTTTTGTTTGCGAACAAAGACTA TCTCAACTCTATCCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.2168879

Conservation Information
Conserved circRNAs	NA
PMCS	0.2168879

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							4960793-4958311(+)
4961172-4958322(+)
4958371-4958322(+)
						
						Potential amino acid sequence
						
							MKGSACSDCIKADMEERSHQKVHMLKNGHSGRKGCARFCLRTKTISTLSRYTWLCKVSSM*(+)
MGTVGEKVAPGFVCEQRLSQLYPGIPGCAKSALCKEILTTPGGLGDNRPLHSLMGDLIKGRYWQ
KVADERKKKPFRITLADKNAPNEEVWRQIEDMCRTTKAAAVPVIPDSEGTDSNPFSLDALAVFM
FRVLQRDNHPGNLDKASPNAGYVLLMFYNLYDGKSRREFESELYERFGSLVKMPLLKPDRAPLP
DEVKAILDEGISLFRLHQSRHGRAEPSKGAYAKEWAQWEKRLRQVLFANKDYLNSIQVYLAVQS
QLYVRRY*(+)
MGDLIKGRYWQKVADERKKKPFRITLADKNAPNEEVWRQIEDMCRTTKAAAVPVIPDSEGTDSN
PFSLDALAVFMFRVLQRDNHPGNLDKASPNAGYVLLMFYNLYDGKSRREFESELYERFGSLVKM
PLLKPDRAPLPDEVKAILDEGISLFRLHQSRHGRAEPSKGAYAKEWAQWEKRLRQVLFANKDYL
NSIQVYLAVQSQLYVRRY*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	4960793-4958311(+) 4961172-4958322(+) 4958371-4958322(+)
Potential amino acid sequence	MKGSACSDCIKADMEERSHQKVHMLKNGHSGRKGCARFCLRTKTISTLSRYTWLCKVSSM(+) MGTVGEKVAPGFVCEQRLSQLYPGIPGCAKSALCKEILTTPGGLGDNRPLHSLMGDLIKGRYWQ KVADERKKKPFRITLADKNAPNEEVWRQIEDMCRTTKAAAVPVIPDSEGTDSNPFSLDALAVFM FRVLQRDNHPGNLDKASPNAGYVLLMFYNLYDGKSRREFESELYERFGSLVKMPLLKPDRAPLP DEVKAILDEGISLFRLHQSRHGRAEPSKGAYAKEWAQWEKRLRQVLFANKDYLNSIQVYLAVQS QLYVRRY(+) MGDLIKGRYWQKVADERKKKPFRITLADKNAPNEEVWRQIEDMCRTTKAAAVPVIPDSEGTDSN PFSLDALAVFMFRVLQRDNHPGNLDKASPNAGYVLLMFYNLYDGKSRREFESELYERFGSLVKM PLLKPDRAPLPDEVKAILDEGISLFRLHQSRHGRAEPSKGAYAKEWAQWEKRLRQVLFANKDYL NSIQVYLAVQSQLYVRRY*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0191700_circ_g.2

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