Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045434_circ_g.3 |
ID in PlantcircBase | zma_circ_009874 |
Alias | zma_circ_0003167 |
Organism | Zea mays |
Position | chr9: 22074162-22074753 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d045434 |
Parent gene annotation |
SNARE-interacting protein KEULE |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d045434_T005:3 Zm00001d045434_T003:3 Zm00001d045434_T001:3 Zm00001d045434_T006:3 Zm00001d045434_T004:3 Zm00001d045434_T002:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.17753201 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
22074217-22074750(+) |
Potential amino acid sequence |
MSEPSSASASQDATQTASSTARPAQNPQPMSMRSRRTPTWAKSRNSDDSSSDSSVLRHASGDFK RLGNRIFVFMIGGATRSELRTVHKLTMKMKREIVLGSSSIDDPPQFISELIEKLSKGELPLKEY PSMSEPSSASASQDATQTASSTARPAQNPQPMSMRSRRTPTWAKSRNSDDSSSDSSVLRHASGD FKRLGNRIFVFMIGGATRSELRTVHKLTMKMKREIVLGSSSIDDPPQFISELIEKLSKGELPLK EYPSMSEPSSASASQDATQTASSTARPAQNPQPMSMRSRRTPTWAKSRNSDDSSSDSSVLRHAS GDFKRLGNRIFVFMIGGATRSELRTVHKLTMKMKREIVLGSSSIDDPPQFISELIEKLSKGELP LKEYPSMSEPSSASASQDATQTASSTARPAQNPQPMSMRSRRTPTWAKSRNSDDSSSDSSVLRH ASGDFKRLGNRIFVFMIGGATRSELRTVHKLTMKMKREIVLGSSSIDDPPQFIS(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |