Detail information of Zm00001d044260_circ_g.2


General Information
CircRNA Name Zm00001d044260_circ_g.2
ID in PlantcircBase zma_circ_007878
Alias zma_circ_0001361
Organism Zea mays
Position chr3: 223167246-223167937  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d044260
Parent gene annotation C3H-type transcription factor
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Zm00001d044260_T001:1
Zm00001d044260_T003:1
Zm00001d044260_T004:1
Zm00001d044260_T002:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTACTAGTCTTCAAAAGCTGACTTTTGTGGACTCCGTGAACAAGTTCAACCCACACTGTAGTT
ACTTGGAATGGAGCAAACAGTTGGGTCAACTTACTGcctgcacctggatgctttgttcatggag
aagcaaaggaatgcaaatggtactcaacataaccttggaggacatgaagcagaaaggcaaaaaa
ttgtgaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCACCTGGATGCTTTGTTCATGGAGAAGCAAAGGAATGCAAATGGTACTCAACATAACCTT
GGAGGACATGAAGCAGAAAGGCAAAAAATTGTGAAGCAAAATAGCCAGAAACCGAATCTATTGC
TAGACGATAAGAATTCATCAGAAGGAGCTACTAGGCATCCATGTTCAGACCCCCAAAAAGCTAC
TTTACCTGTTAATTCTATTGCAACACCTGGATCAATACATACTCAGCATGAAGTCTCAGAGGCT
TCTAGGATTTTGCAGGAGTTCTTGTTTGGTGCTGGCAGTTAGAGGAAAGTATGTGTGAACTATT
CTGCCTTTTGATACCTGTATTTTGCACTATATATATTAAGTCGATATAAAATTTTGCCAATTGC
TGTTTACATGGATTGAATTCATGCCCATGTCCTTTCGACTCTTCTGATACGCTGCCAGTTTCCT
TGCTGGAACTGCACCTCAAAGTTTGTTTTCTATTTTGGCTACTTGCAAGGTCAACAGGAAAATA
TCACTGTAGGCAAATGTGTATCGTTGTTTTGTTACTAACAAAGTTGACCGAGGACTTAATTTTG
CAGAAGTAAGCACAGGTTTACTAGTCTTCAAAAGCTGACTTTTGTGGACTCCGTGAACAAGTTC
AACCCACACTGTAGTTACTTGGAATGGAGCAAACAGTTGGGTCAACTTACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.131793461
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b