Detail information of Os05g0579900_circ_g.3


General Information
CircRNA Name Os05g0579900_circ_g.3
ID in PlantcircBase osa_circ_042197
Alias NA
Organism Oryza sativa
Position chr5: 28870377-28870810  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRI-long
Parent gene Os05g0579900
Parent gene annotation Similar to 10A19I.11. (Os05t0579900-01);Heat shock protein DnaJ,
N-terminal domain containing protein. (Os05t0579900-02)
Parent gene strand +
Alternative splicing Os05g0579900_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTACGGAGTAGCTTGGAAGGAACTATGATTGTTTAAACTTACTGAATTTGGCTTGAGTTGCT
CCTTTTCTTCATCGCACTGACAGTTTTAAGCAAATTgtttgtgcaatgtctacaaaatttgtta
tgattatttggaagttcattttctcatgtgtccttttccatttctgattgcattagtacaagca
tgtttgca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 434
Transcript exons: 28870377-28870810
GTTTGTGCAATGTCTACAAAATTTGTTATGATTATTTGGAAGTTCATTTTCTCATGTGTCCTTT
TCCATTTCTGATTGCATTAGTACAAGCATGTTTGCAAGAACTGTGTTACTCTAGGATCATTCTG
GTTTAACAATTCTCTGGGAACCTTTCACCTCCTAATTACGCTGTTAATACGATGTTTTGGGTCC
CCTGTTCCTTTTCACCGTTATCGCACAAGCTAATCCGATTTAGGGCCTGGAGATTATTTAGCAA
GCATGCTATGCAAGTGTCAATAGGCAACTGTAAATCAACTCAAATTCTAGAATGAACCACGCCT
TGATTCTTCACCTTTGCTACGGAGTAGCTTGGAAGGAACTATGATTGTTTAAACTTACTGAATT
TGGCTTGAGTTGCTCCTTTTCTTCATCGCACTGACAGTTTTAAGCAAATT

Genomic sequence GTTTGTGCAATGTCTACAAAATTTGTTATGATTATTTGGAAGTTCATTTTCTCATGTGTCCTTT
TCCATTTCTGATTGCATTAGTACAAGCATGTTTGCAAGAACTGTGTTACTCTAGGATCATTCTG
GTTTAACAATTCTCTGGGAACCTTTCACCTCCTAATTACGCTGTTAATACGATGTTTTGGGTCC
CCTGTTCCTTTTCACCGTTATCGCACAAGCTAATCCGATTTAGGGCCTGGAGATTATTTAGCAA
GCATGCTATGCAAGTGTCAATAGGCAACTGTAAATCAACTCAAATTCTAGAATGAACCACGCCT
TGATTCTTCACCTTTGCTACGGAGTAGCTTGGAAGGAACTATGATTGTTTAAACTTACTGAATT
TGGCTTGAGTTGCTCCTTTTCTTCATCGCACTGACAGTTTTAAGCAAATT
Conservation Information
Conserved circRNAs NA
PMCS 0.107718894
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study