Detail information of Zm00001d009588_circ_ig.1


General Information
CircRNA Name Zm00001d009588_circ_ig.1
ID in PlantcircBase zma_circ_000424
Alias NA
Organism Zea mays
Position chr8: 71899109-71899215  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 2
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGTGCATCCGAACACCTAGATATCCGCAGCGGTGGCCGGTGGGCGGTGGCGCcctggtacggt
aagtaatttacatcatggtacaaactggaaccagtgcgcgctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTACGGTAAGTAATTTACATCATGGTACAAACTGGAACCAGTGCGCGCTCACGTGCATCC
GAACACCTAGATATCCGCAGCGGTGGCCGGTGGGCGGTGGCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.238316822
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015