Detail information of AT2G47000_circ_g.2


General Information
CircRNA Name AT2G47000_circ_g.2
ID in PlantcircBase ath_circ_018771
Alias NA
Organism Arabidpsis thaliana
Position chr2: 19310457-19314776  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene AT2G47000
Parent gene annotation ABC transporter B family member 4
Parent gene strand -
Alternative splicing AT2G47000_circ_g.3 AT2G47000_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G47000.7:8
AT2G47000.6:10
AT2G47000.3:9
AT2G47000.4:9
AT2G47000.2:10
AT2G47000.5:10
AT2G47000.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTTGTCTCTTTTGGTCTCAGAAACCTCTTCTAGTATATTTGGATCTCCATTTAAGCCGCTCT
CTGAAGCCATTAGAGTTTCACAGATACCTCACGATCctgttgcagaccactgatgaatccatgg
gcgtttgataattcagctgaagatacgatttcggattcactcgcgtctcctcctttgccataag
caatgttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTGCAGACCACTGATGAATCCATGGGCGTTTGATAATTCAGCTGAAGATACGATTTCGGAT
TCACTCGCGTCTCCTCCTTTGCCATAAGCAATGTTGGCTCTAATTGTCTCGTTGAACAAGATTG
GTTCTTGGCTCACAAGTCCCGTTTGTTGTCTTAGCCATTTTAGTCTTAGGCTCTTGATCTCTAC
ACCGTCAAGAGTGATCTCACCTGAATCTGGATCGTAAAACCTCTGCAACAATGCAATCACCGTT
GATTTCCCGCTACCGCTTTCTCCAACCAAAGCAACTGTCTGGAATGTGAAACAGAGAACAGAGG
TTTACTCAAAAGGTTCTGCCTTTTTTGCTCAAAGAATGAAAGTTTTGAAATCCTAACCTTTCCA
GCTCGAATGCTTAGACAGAGGTCTTGGAAGATTTGAACATCTGGTCTTGCTGGGTATTTGAAAC
TAACATGACGAAGCTCAATGTCTCCTTTAACATTATCCAACACTCTTCCTGATTCCACACTTGG
GTCAATCTTTGATTCCCTGTCCATTATTGCGAAAATCGAGGCAGCAGCTACATCGGCTTTGCTG
GAATCTGGAGATAACGAACTCGATTGAGATATCGCCATTGCCGCCATTGTCAAAGCAAAGAAAA
CCTGCATTGTTAAACATGACAAGGGATCAAGAAACTCTCAAGGGAAGGCATTTATCATCAACAT
GTTGTGTGTTTTGTTTCCGTACCCTGAAAACAGAGTCGAAGGTTGTTTTGCCATCATCGACAAG
GCGTGCTCCAACGTAGAAACTGGCAGCGTAAGAAGAGAAGAGGACGAAGAAAGAGAAGCCGAAA
CCAATACCACTGACTATGCCTTGACGAATCCCATTCTTCATTGGACCTTCACATTTCTTTGAGT
ACATGTTCATCACCTTGTCTTCTGCACAGAATGAAGCAACGGTTCTTATGCTCCCTACCGCGTC
ATTCGCTACTTGGCTTGCTTCCCCGTACATTTTCTGCCAATGATTTAAAGTAACGTTAATCAAA
TGATTGAGAGAATCTAGTTGGTATATGTATGAAAAGTAGTAACTAGTTTACCTATCTTAGCAAA
AAAAAAAAAAAAAAAAACTAGTTTACCTTTGCATCAGCGCTGAAACCTTTCATGAACTTCATAT
AAAGAAATCCATTGAGTGCGATAAGCGGGAGCATCGCGAGGACCACGAAAGCTAATTGCCAACA
AGCCAAAAATGCAATGATCAAACCAGCCAATATAGATGAAAGATTCTGAACTGTCTGAGCCAAA
GAGTCTCCAACTAGACCACGGATTGTGGCAGCATCTGCTGATAGCCTTGCTCCTATGGTTCCAC
TAGAATTCTCTGGCTCGTCGAACCATCCAACTTCCATGTGAACCACTTTCTCAAAACACATACT
TCTGATCCTCTGCACTAGTTTACATCCAGCTATGGCAAAGAAGAAGGTTTGTGCTGGGTATGCA
ATGATGGATGCGAAACCAAGAACCATGAATATGATTGCCCAGAAGCTTGTATCTTCTTTTAGCT
TTTTAGGTGGTTGGAAAAACGCTTTGATTACGCTGGAGATTAGTATGCCAAAGATTGGAAGGAT
AACGCCATTTGCTGCTGCGGATATTGATCCAAGTATTAGCACCGGAATCTCTGGTTTGTTTAGA
GCAGCAATTCTGAAAATGGAGACTTTTTTTGGTTCGGTTTTTGGTTGTGTAGTATCATCCTCTT
CTTGATCTTGAACGACGTTTCCGTCAATTCCTGCTGGAAAACCAAACATATTGAAAGAATGGCG
GCTGCTGTTTCCTCTGGATGATCCTCCTTTGCTTAGAGACCGGCCTAGAGACGATTTTCTCAGA
CTAGATTGTTTGAATGATTCAATTGATGACATCTTTTGCTCCTCCGCTGCATTCTCATCAGATT
TCTTCTCTTCTTGTAGACGAATCAGCTGAGAATAAGCTCCTTCCGGGTCCTTTAGTAGTTCCGT
GTGAGAACCTGTTCATCAAATTTTGCTATCACACATGTGTATCCATATGCAAAAAGTGAATAAG
AATGTTAGGTAGTTTACCTTTCTCGACGATCTTGCCTTGGTGGATCACAGCGATCATATCCGCA
TTTCGCACAGTGCTTAACCGATGAGCGACCACAACAGTAGTCCGGTTAACCATAATTCTATCAA
GCGCTTCTTGAACCACTCTCTCAGATTCTGCATCAAGCGCGCTTGTAGCTTCATCTAAAAGTAA
GATTCTTGGATCTTTTAAGATTGCTCTAGCCACCGCGATTCTCTGTTTTTGTCCACCGGAAAGC
TGAGTACCATGTTCTCCAACCATTGTATCCAAACCCTGTGGTAGCTTATCCACAAATTTAGATG
CGTTTGCTAGCTCTGCAGCTGCTTTAATCTCTTCGGTTGTTGCGTCTTCTTTGCCGTACGCAAT
GTTATCCTTGATGCTTGCAGTGAACAAAACTGGTTCTTGACTCACAAGTCCAATCTTGCTTCTA
ATCCATTTTAGCTGAAACTCTTTTAAGTTAATACCATCTATGAGAACGTCACCAGCTTGTGGAT
CGTAAAACCTCTCAATCAGACTCACAACAGTAGATTTCCCGCTCCCACTTTGTCCAACTAAAGC
CACCGTTGTACCACTCGAGATAAACAGAGAGAATCCGCGAAATATTTGCTCATCGGGTCTCGCT
GGGTAAGTAAAGTAAACATCTTTGAGCTCAATATCTCCCTTAATGTCATCCAAAACTTTACCAT
TTGTACTATAAGAATCTATGTTAGGTCTTCTCTCAATTGTCTCAAACATCTTGTAAGCCGCGGC
TTGTCCAGCTGCAAATGCGCTTAAGCAAGGCGATGTTTGACCTAACGACCTAAGGAAGGAACAA
AAAGATATCTCAAATTAGTTTGCAGGGAAGTTAATGAACCAAAGAGGTATTGCTAATGAAAGGT
ACTTACATGGATCCAGTTAAAACAGCGATGATGATATTGAGAACTTGTCCTCCTGTGTAGCCTT
TATCCAATATCAACTTTCCTCCATACCATACTGCTAAAGCGTAGCTACAAAAGACTACAAGAAA
GAGCGTTCCAAGACCCAATCCAGTTGAACCACCTTCAATGACTCCTGCTTTATAAGCAGTGACA
AGATGTTTATTGTAATTGCTTATCGCTTGTTTCTCTCCTGTAAATGATGCAACCTGCAAAAATG
TAGATAGTAAGTCTTTGTGGTTTTGGTAATTTTGGCTAAGTAAAAGTGTATAAGTAAGCCTAAT
TACCGTTCTTATAGAACCAATTGTTTGCTCAACTACAGTGGCAGCTTTGGCGTAAGCAGTTTGT
CCACGAGAAGCTGTTTTAGCAATGACGATAGCCAGAAGTGCACCAGCCATTACAAGTAGAGGAA
TTGAAGATAACATGACCAACGTTAGAAGCCATCCTCTTACGAAAGCTATCACAAAGCCTCCTAC
AAATGTTGCTAGAAGTTGTATAGCTTTTCCCACCTGACAAAAACGTCGTCGTTTTAACAAATAA
AGTTTCAAACATTAGAACGCCATGTTGACTTTTTTTTAGTAGCTTACCTTTTCTCCCATGGCAT
CTTGGATTAGCACAGTGTCACCGGACATTCTTCCAACAACTTCTCCTGTATTTGTATCGATGTC
GAAAAAGGCTATATCTTGTCTTAAGATTGTCTTTAGATACAAACTCCTTATTCTCGCTGCTTGT
CTCTCTCCAGAAATCATCCAGCCAGACAATTCTGAACATTCATAGACATCAAAAAAGTTTACAC
TCTTTGTTTTCTTGAAATCTTTTTTCACAAAGTTTAGATCCTTCGACAGATCCAATGAACTTAC
GGAGAAAAGCAGCTGCGAAAGTACCGATTCCAAGCCATACAAACTTCAGAGCAACCTGTGTGAG
TTAAATAAAAAAAACTAGTAAGAAAGTCAAATCTTGAAATGAATCCCAATTAAGACAAAAAACA
TTCGTTTGATTTACTTTGGAGACTTTGTCTGTTGTATTAGTCTGATTCTCTCCAAAAGCATCAA
TGAGATCTCCGAACAGTAAGGTCATAAGAGGGAAGCCAAGACCATTTCCAATAGATCCAAGCGT
CCCGAGGATCATCAAGAGGAAATCAAAGGAATCTGCAAAAGCAAAGAGCTTATAAAACGGCACC
GTTTTGGTTTTCTCATGTTCCTCGTCTTTCTTCTCTGTTTTCTTCACTTCTTCTTCTTCTTCCT
TGTCTCTTTTGGTCTCAGAAACCTCTTCTAGTATATTTGGATCTCCATTTAAGCCGCTCTCTGA
AGCCATTAGAGTTTCACAGATACCTCACGATC
Conservation Information
Conserved circRNAs NA
PMCS 0.174052489
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR854b
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017