Detail information of Os01g0367700_circ_g.1


General Information
CircRNA Name Os01g0367700_circ_g.1
ID in PlantcircBase osa_circ_001735
Alias NA
Organism Oryza sativa
Position chr1: 15063132-15064317  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0367700
Parent gene annotation Similar to Cyclin-dependent protein kinase-like protein. (Os01t0
367700-01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0367700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATATCCACCAAGTAAGGA
GATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAGgtagaacagttgcacaagattttcaagc
tatgtggctccccctcagaggagtattggaaaaagtccaagctgccacatgctacaatattcaa
acctcagc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 329
Transcript exons: 15063132-15063359,15064217-15064317
GTAGAACAGTTGCACAAGATTTTCAAGCTATGTGGCTCCCCCTCAGAGGAGTATTGGAAAAAGT
CCAAGCTGCCACATGCTACAATATTCAAACCTCAGCAGCCCTATAAGCGTTGTATCAGAGAAGC
ATTTAAAGATTTTCCTCCATCTTCCTTGCCGTTGGTTGAAACTCTGCTTGCAATTGATCCAGCT
GAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAATTCTTTGCAACTGAGCCTTATGCATGTG
ATCCATCAAGCTTGCCGACATATCCACCAAGTAAGGAGATGGATGCTAAGATGAGAGATGAGGA
AGCTAGAAG

Genomic sequence GTAGAACAGTTGCACAAGATTTTCAAGCTATGTGGCTCCCCCTCAGAGGAGTATTGGAAAAAGT
CCAAGCTGCCACATGCTACAATATTCAAACCTCAGCAGCCCTATAAGCGTTGTATCAGAGAAGC
ATTTAAAGATTTTCCTCCATCTTCCTTGCCGTTGGTTGAAACTCTGCTTGCAATTGATCCAGCT
GAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAAGTATGTCCATATCTTTTCCTCCTTAGCA
TTGTAACAGAGAATGTTAGTGTGAAGTAACATAATTGACCTGTGATTTATGTGGTCCTTTGATA
CATATCACCTCTATGTGGAATCACTTCTATACTCTTGAGAACAGAAGAAAAAAAAATCCTGCAG
TATGAGCAAAAGTGTTCAAGAATCTTTTTAAACAACAATCCATCTTTGTTATTGTTTCAGTCTT
TCGGAAGCTTTTATAGATACTAAACTGCTGGTTTGACAATGTGGCATCTTTTGATTAATCTAGT
TCCTTTTCTCCTAATAATCTGAGCGTAGATATCCTACATGAGTAGTGCTATGACATAAAATGCA
AGGAGCAACACCAATAAAATGACGTTTTGCACACTCAAATACCAAGAAATGGCTGGTATTCAGA
TGTGTAATGTACTGTAACTATAAATGGAAAAGATCTGTTATGTTTTTAAATCTTTAGATTTGGT
TTGTACCAAGGACCTCATCTTTATGAAGGTCTAAATGGCTACTTTGACTTCCAGTATAGGTTCC
AAAAGGTTTTCTGTTTTAGAATTGTCGATTTAATATCTGCATTTCATGCACATGTGATATCTGG
AGATCTATGCCCACTTATTAGCACCATTGCAATTTTCTAGACCACATGATTTAATGGGTTACAT
TATGTTTTCTGCTTCAATATTTAGTGCTGCGCTTGGTACGACTCTCCCTAATGTTCAGTACGTA
GGAAATCTCTTATTTATTTATTTAATAATATAGCTCCACCCTTGGTATACAGTCCTAATTTTTT
TATTTTGACGAGCTATTAGGCTATCACTATGTAGTAAGGTTTTATGCTGTGAGTATTGCAGTTC
TTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATATCCACCAAGTAAGGAGA
TGGATGCTAAGATGAGAGATGAGGAAGCTAGAAG
Conservation Information
Conserved circRNAs osi_circ_009442
PMCS 0.286195166
Functional Information
Coding potential Y
Potential coding position 15064303-15063238(+)
Potential amino acid sequence MRKLEGRTVAQDFQAMWLPLRGVLEKVQAATCYNIQTSAAL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017