Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d035844_circ_g.1 |
ID in PlantcircBase | zma_circ_002226 |
Alias | circ1948 |
Organism | Zea mays |
Position | chr6: 55325575-55326849 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d035844 |
Parent gene annotation |
ubiquitin receptor1 |
Parent gene strand | + |
Alternative splicing | Zm00001d035844_circ_g.2 |
Support reads | 25 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d035844_T009:6 Zm00001d035844_T015:6 Zm00001d035844_T010:6 Zm00001d035844_T002:6 Zm00001d035844_T019:6 Zm00001d035844_T007:6 Zm00001d035844_T020:5 Zm00001d035844_T001:6 Zm00001d035844_T005:5 Zm00001d035844_T014:6 Zm00001d035844_T003:5 Zm00001d035844_T018:4 Zm00001d035844_T011:6 Zm00001d035844_T004:6 Zm00001d035844_T016:6 Zm00001d035844_T012:6 Zm00001d035844_T006:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.127145641 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |