Detail information of BGIOSGA033517_circ_g.4


General Information
CircRNA Name BGIOSGA033517_circ_g.4
ID in PlantcircBase osi_circ_009229
Alias Chr11:31288016_31288834(ZS97RS2), Chr11:32684711_32685558(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 22886907-22887754  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA033517
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA033517_circ_igg.1 BGIOSGA033517_circ_g.1 BGIOSGA033517_circ_g.2 BGIOSGA033517_circ_g.3 BGIOSGA033517_circ_g.5 BGIOSGA033517_circ_g.6 BGIOSGA033517_circ_g.7 BGIOSGA033517_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA033517-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGCAGCACATCATGAAGATCCACTAGTATACCGTGATCTAGCATGGCCACGGAGTTCAGGAG
AGCGGGAACGTGAGTGTGAATGACAATGAGACCGTCcctggaggggatggctggggtgatctgc
ccagtgcccaggattgctcaccatcaggtgccggcggcgtcctgtcaacacaacatgcaatgtt
actattac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGAGGGGATGGCTGGGGTGATCTGCCCAGTGCCCAGGATTGCTCACCATCAGGTGCCGGCG
GCGTCCTGTCAACACAACATGCAATGTTACTATTACACATCAACAACAAACGGACATCTGAGAC
ATGACCAGCATATCATTAATTCAAGAGCAATTCTACAGTCCTTGAGGAGGTACCATGAGGTACT
ATTTTTTCTATTGTAAATTTGATACCTCATGGTACCTCACAGTACCTAGATACCATGAGGTATC
AAATTTACAATAGAAAAAATAGTACTTCATGGTACCTCCTCAAGGACCGTAAAATCGCTCTTAA
TTCAAACACAGATGAATATGGCACCGTCTGTTACCAGTAACAACTAACAAGTTAATAACCAACC
TCAAACAGAATATCATTTAGGCATACAAATGAGCAAGGACGCATCACATCATTCGGAAAATAAA
AGGGACTCTATATGCAACATACTATGACTCAACTTCAAATTATATGTAACGAGATTACACCAGA
CACATGTAGCAGTACAGGAACAGAACTTACTGATCATAACCATTGTCAGCATCCCGGCGATCAT
TATATTCAGGAGTATAGGATCTGCGCTTCTCATCATGTTCTTTAGCCTGTCCTGATGATTTTGT
TTGGTGCTTCTCCCTTCTCTGTGGGGAAGTAGACTGGTTATCTTGCCTTCCTGTGGCAGGAGAG
CATGACCTACAATGTGAATAAGATTGTTAAGGAAAAATGTTCATTCTGCAGCACATCATGAAGA
TCCACTAGTATACCGTGATCTAGCATGGCCACGGAGTTCAGGAGAGCGGGAACGTGAGTGTGAA
TGACAATGAGACCGTC
Conservation Information
Conserved circRNAs osa_circ_010200
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021