Plant Circular RNA Database

Detail information of 5_circ_ag.4

			
						 General Information
					
						CircRNA Name
						5_circ_ag.4
					
						ID in PlantcircBase
						ath_circ_041843
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 16496446-16500195  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT5G41210_circ_g.1 5_circ_ag.2 5_circ_ag.3 5_circ_ag.4 AT5G41210_circ_g.5 5_circ_ag.6 5_circ_ag.7 AT5G41210_circ_g.8 5_circ_ag.9 5_circ_ag.10 AT5G41220_circ_g.1 5_circ_ag.2 AT5G41220_circ_g.3 5_circ_ag.5 5_circ_ag.6 						
					
						Support reads
						3
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_ag.4
ID in PlantcircBase	ath_circ_041843
Alias	NA
Organism	Arabidpsis thaliana
Position	chr5: 16496446-16500195 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	CIRI
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT5G41210_circ_g.1 5_circ_ag.2 5_circ_ag.3 5_circ_ag.4 AT5G41210_circ_g.5 5_circ_ag.6 5_circ_ag.7 AT5G41210_circ_g.8 5_circ_ag.9 5_circ_ag.10 AT5G41220_circ_g.1 5_circ_ag.2 AT5G41220_circ_g.3 5_circ_ag.5 5_circ_ag.6
Support reads	3
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TACTGTTATGAATATAATACATGCACCAGGGCGTAAATTGGTGTGATGCCAATCCAAAACGGAG
TGAATCTTGGCTCTTTTGGAAAGATCATTCGGGTACcaatgatcaactacacttgggtatgctg
aggaaagatatatcaagatagcgtgactgcgaaaacggttaagattattcataaacaatggttt
agatacaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CAATGATCAACTACACTTGGGTATGCTGAGGAAAGATATATCAAGATAGCGTGACTGCGAAAAC
GGTTAAGATTATTCATAAACAATGGTTTAGATACAAAGGAAGCAACTTTGTGTTAAGAAAAAAC
CTCTCAGAGAGCTTAAGTTTGCCATCAACAATAGCTGGAACTTTCCCCATTGGGTTAATATCTG
AGAAACAAAGACTCAAATCTCACTGTAAAGACCAAATCAAGTTTCAACTTTTATCGAAATCCGA
ATTCACCCATGTCAAAAAAAAACCTTTTTGCTGATTATTTATACAAACCTTTAAATTCAGGGGA
TAATTGTTGACGATTCGCCAAGTAAATCAATATCTCATCGAATTGGATTTCATTAACCCTTGAA
ACAAAAAAAAATTAGAATCAATTTTTTTTTTGTGCTGAATTGCGAATTAACAAGGAAGAAGAAG
AAGGAGTTTACTTGCAGAATATGAGGACAGCACGAGATGGCTGTGACATTCGATCCGCATACAC
TTTGAGCTTCATCTTCTTCTTCCTCCGATTTTGTGTATCGGAAAAAGTTTTCTCTGAACGAACG
GCGATAATCTGGCGAAGAAGACAAGTAGTGATCTCACAGAACCAAATTAGATTGCTGTTTCCAC
AATAGAGAGTAAAACATCTAAACCGGCCGGTTGGGCTAAATGCTCCTTCACCATCAAATTAATG
AAGTAACAAATCATAACCGGTCCTTAACCAGAAGAGTTGAAATCACAATATTTTTCTTTCTATG
AAACACATGCAATATACCAAACTACAAAATGTTTTATATTTATCGTATTTTTTTTTATCTAATG
AACAAATAAACATGGACCGGAGCAAATCATAATGATAATCACATCCATGAGAGCCAACATTACA
AAAAATCTCAAGTAAACTATCAAAAGTAATATCAAAAGCATCTCAAAATCTTTGAAACTTAGCA
TTAGAGTCTCCATATACCAAACCAGGCAAAAGCTGATGAACTATGTAACTTCTAATATCCTCTT
TCTCCTTTAGAGTCTTTACCTTCACATCTTCTTGGCTTATATACACTTAAGTATTTTTGATGAT
TCTCCGGTTAGTGCCAAGCGTATTGATAATAAGTTGTGTATGAATTAAATATCACTGGAATGCA
ACAGGAGTTAGTGAATCGAAAACCGACCGATTTTTTCGTTGGACTATCTCCTCACGGTTGTAGA
CAGTACTCTAAGTCTTGAAATAGCTCTATGACATTCTCAGGCTTCTCGCAACTTCCGTTAGTAC
AGTTTAAGAACCGACTATGTTCAGAAAATGATGTGCATTGTTCGATTAGCGTTGACCGGATGCT
ATTAGGATTACCAGGTCTTGAACCTCTAGCAAAACTTATTAGATTCTTGCGAGGTTTTTTCATC
ATCTTGACTTGCCAGCTAACATTATTGAGAGGGTTTTAGGCATATGTTCGTTTGAAGAGTTTAA
GAAACGAAAGAGAGAGATTTGATAGAAATCAAAGGGGATGGTAAAAGGGAGACATGAGAGAAAT
CAAAGGGAAGTGATGATAAAAGGAGACAGTTTCAAGTTTCCTACCTTAAGTTAAAGTGAAACAG
AGAGGGAACAGTGACCTTACAGAGAAACAGAGCGAGAGTGTGAAGTTACAATGTTCGACTTCTT
ACGGAGAAACAAAGAGGGAACGTGTTTCCTACCTGAACTGGAGAGTGAAACAAACGTTGAACAT
AGTTAAGGAAGATTCAGTTAGTATCTATTTCTAGAAAAGCCGTCTATAGCCTGTCACTAAGTTG
ATAGTGAGATAAACATAGAGAAAATAAAGAGATAAATACAACGAGAACATAGAGATTAGAGCAT
CTCATCAATGAGCTTGTTCTTCAAAGTTTCTTCCTTTTCAGAAGTTTCACCTGTTCTTCTTCCA
AGAAGACTTTTAAGGACTTCCATCCTTGTTAGTTTCTTTTGCTCTTCTATGTCTTTCTCCTTCA
GTGCCCACAAGTTCTCAAGTCTTGATCGGGAATCTGCCTCCCTTTCTTCTTTCTCCTTTAGTAG
CCACAAGTTCCCAAGTCTTGATCGAAAATTGGCTGCCTCCCTTTCTTCAATCATTGTTTTAGTA
GCAACTTTCCTCTCTTTCTGCTTCGATGACTTCACACCAAGAGGAAGATCCATAACTTGCTCCT
CTTCATCTAGTACCCACAAGTTCTCAAGTCTTGATCTAGAATCGGCCTCCCTTTCTTCAAGCAT
TGTTTTAGTAGCAACTTTCTTCTCTTTTTGCTTTGACGACTTCACACCAAGAGGGCGATCCATA
ACTTGCTCCTCTCCATCTAGAGCTATAGGCACACTCTCCGGATTACAGCTTGAAGAATATACAC
CACCTCCATTCAACTTTGTTCTCTTTGAGCTTCCACCCCCCTTAGAATTTTCAGAGGTGTATGT
ACTACACCATTTTTTATTGTGTCGGAGCTCCCGCCATGCATGCTCAAGTTTGAAATTACTCATG
TAATTGTTGTAGTACAATTGGTATGCAACTTGGAAAACATCATCTTCAGATTGACCACTAGCTC
TTTGATTCAAAGCTTGATCATAACATCCAACAAATTTGCAGACGTAGTCGTTAATTTTCCTCCA
TCTTTGCCTGCAGTGATTCCACTCTCGCTTTGGTAGATTTGCAAGTGAAGCGCTATTTGAAACA
TGTGCACCAATTCTCTTCCAAAAAGTATGTGCTTGTTGTTCATCATAAACGACAACTTTACGAT
CCTTACTAGTATTTAACCAAGCACTAATGAGAATGACATCGTCAGGTGGACTCCATTTGCGTCT
TCGAGCTTTACGATCGGTTGTGTCTTGAACGAGGTTTGGACCATCACTCGTCCCACCAATACTA
CTAAATTGGATACTGTATTATGGAAGATCCATGAAACTGGATGAGAAATTAAACGGAGTGTTTG
GATCTCGAATGACTTATCTTTAGGGGGAAGGAGTCTCTCATATAGAGACCCTGATGAAAGTGGT
CAAGTTTTTTGTTCTTACATCTTAGATTGAGGACCCGGTTTAGATGCGGTTGCCATCTCTCGCT
GCTTCTGAAATCTATCTTTGGCTCTGAAAAGGACCTCATGGACCTCATCAGAGTGAGGCATTGT
CGCTTTTCTCGTACTCTCAATCCATTGTTCAACTTTCTTATGAGGGCTAAGCAATCTAAGACGA
TCTTTGTCATCCAAAACCTATAAAATAGAATAAATTTTACAATCAAAAGTCATAACCGAGATAA
GGAAGCAACTTTTTTGCTCCATAATGTTTGATATGGTTAGTTACATTGGTATTTCGATGACTTA
ATAAAACAAATAAAAGTTGGTAAAGAAGATGATTTTTTTGCGTACCTGCAGCTGCATAAGTTCA
CATACAAGGCTGAGATCAGCTATAGATGGTTGCTTGCCCCCGAGTAAAAACTTGGCACTGCCCT
TAAGCCAAAAAGTCTCTAGAGTGGACAGAGAGTTTGTTAGTATGTTCTCAGCTTCAGCAGCTGC
TTTCGGATTCAGTGGAAGACCAAGAGCTGGAGCTAGAACGCTATTCAGAACATATCCAGCTGAG
AGATTGTTAAATAACCGTAATCAGAAACATGAAGCCTTATTTGAATATACAACTAATTAACATC
GATACTGTTATGAATATAATACATGCACCAGGGCGTAAATTGGTGTGATGCCAATCCAAAACGG
AGTGAATCTTGGCTCTTTTGGAAAGATCATTCGGGTAC
						
					

			
		

Sequences
Splice junction sequence	TACTGTTATGAATATAATACATGCACCAGGGCGTAAATTGGTGTGATGCCAATCCAAAACGGAG TGAATCTTGGCTCTTTTGGAAAGATCATTCGGGTACcaatgatcaactacacttgggtatgctg aggaaagatatatcaagatagcgtgactgcgaaaacggttaagattattcataaacaatggttt agatacaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CAATGATCAACTACACTTGGGTATGCTGAGGAAAGATATATCAAGATAGCGTGACTGCGAAAAC GGTTAAGATTATTCATAAACAATGGTTTAGATACAAAGGAAGCAACTTTGTGTTAAGAAAAAAC CTCTCAGAGAGCTTAAGTTTGCCATCAACAATAGCTGGAACTTTCCCCATTGGGTTAATATCTG AGAAACAAAGACTCAAATCTCACTGTAAAGACCAAATCAAGTTTCAACTTTTATCGAAATCCGA ATTCACCCATGTCAAAAAAAAACCTTTTTGCTGATTATTTATACAAACCTTTAAATTCAGGGGA TAATTGTTGACGATTCGCCAAGTAAATCAATATCTCATCGAATTGGATTTCATTAACCCTTGAA ACAAAAAAAAATTAGAATCAATTTTTTTTTTGTGCTGAATTGCGAATTAACAAGGAAGAAGAAG AAGGAGTTTACTTGCAGAATATGAGGACAGCACGAGATGGCTGTGACATTCGATCCGCATACAC TTTGAGCTTCATCTTCTTCTTCCTCCGATTTTGTGTATCGGAAAAAGTTTTCTCTGAACGAACG GCGATAATCTGGCGAAGAAGACAAGTAGTGATCTCACAGAACCAAATTAGATTGCTGTTTCCAC AATAGAGAGTAAAACATCTAAACCGGCCGGTTGGGCTAAATGCTCCTTCACCATCAAATTAATG AAGTAACAAATCATAACCGGTCCTTAACCAGAAGAGTTGAAATCACAATATTTTTCTTTCTATG AAACACATGCAATATACCAAACTACAAAATGTTTTATATTTATCGTATTTTTTTTTATCTAATG AACAAATAAACATGGACCGGAGCAAATCATAATGATAATCACATCCATGAGAGCCAACATTACA AAAAATCTCAAGTAAACTATCAAAAGTAATATCAAAAGCATCTCAAAATCTTTGAAACTTAGCA TTAGAGTCTCCATATACCAAACCAGGCAAAAGCTGATGAACTATGTAACTTCTAATATCCTCTT TCTCCTTTAGAGTCTTTACCTTCACATCTTCTTGGCTTATATACACTTAAGTATTTTTGATGAT TCTCCGGTTAGTGCCAAGCGTATTGATAATAAGTTGTGTATGAATTAAATATCACTGGAATGCA ACAGGAGTTAGTGAATCGAAAACCGACCGATTTTTTCGTTGGACTATCTCCTCACGGTTGTAGA CAGTACTCTAAGTCTTGAAATAGCTCTATGACATTCTCAGGCTTCTCGCAACTTCCGTTAGTAC AGTTTAAGAACCGACTATGTTCAGAAAATGATGTGCATTGTTCGATTAGCGTTGACCGGATGCT ATTAGGATTACCAGGTCTTGAACCTCTAGCAAAACTTATTAGATTCTTGCGAGGTTTTTTCATC ATCTTGACTTGCCAGCTAACATTATTGAGAGGGTTTTAGGCATATGTTCGTTTGAAGAGTTTAA GAAACGAAAGAGAGAGATTTGATAGAAATCAAAGGGGATGGTAAAAGGGAGACATGAGAGAAAT CAAAGGGAAGTGATGATAAAAGGAGACAGTTTCAAGTTTCCTACCTTAAGTTAAAGTGAAACAG AGAGGGAACAGTGACCTTACAGAGAAACAGAGCGAGAGTGTGAAGTTACAATGTTCGACTTCTT ACGGAGAAACAAAGAGGGAACGTGTTTCCTACCTGAACTGGAGAGTGAAACAAACGTTGAACAT AGTTAAGGAAGATTCAGTTAGTATCTATTTCTAGAAAAGCCGTCTATAGCCTGTCACTAAGTTG ATAGTGAGATAAACATAGAGAAAATAAAGAGATAAATACAACGAGAACATAGAGATTAGAGCAT CTCATCAATGAGCTTGTTCTTCAAAGTTTCTTCCTTTTCAGAAGTTTCACCTGTTCTTCTTCCA AGAAGACTTTTAAGGACTTCCATCCTTGTTAGTTTCTTTTGCTCTTCTATGTCTTTCTCCTTCA GTGCCCACAAGTTCTCAAGTCTTGATCGGGAATCTGCCTCCCTTTCTTCTTTCTCCTTTAGTAG CCACAAGTTCCCAAGTCTTGATCGAAAATTGGCTGCCTCCCTTTCTTCAATCATTGTTTTAGTA GCAACTTTCCTCTCTTTCTGCTTCGATGACTTCACACCAAGAGGAAGATCCATAACTTGCTCCT CTTCATCTAGTACCCACAAGTTCTCAAGTCTTGATCTAGAATCGGCCTCCCTTTCTTCAAGCAT TGTTTTAGTAGCAACTTTCTTCTCTTTTTGCTTTGACGACTTCACACCAAGAGGGCGATCCATA ACTTGCTCCTCTCCATCTAGAGCTATAGGCACACTCTCCGGATTACAGCTTGAAGAATATACAC CACCTCCATTCAACTTTGTTCTCTTTGAGCTTCCACCCCCCTTAGAATTTTCAGAGGTGTATGT ACTACACCATTTTTTATTGTGTCGGAGCTCCCGCCATGCATGCTCAAGTTTGAAATTACTCATG TAATTGTTGTAGTACAATTGGTATGCAACTTGGAAAACATCATCTTCAGATTGACCACTAGCTC TTTGATTCAAAGCTTGATCATAACATCCAACAAATTTGCAGACGTAGTCGTTAATTTTCCTCCA TCTTTGCCTGCAGTGATTCCACTCTCGCTTTGGTAGATTTGCAAGTGAAGCGCTATTTGAAACA TGTGCACCAATTCTCTTCCAAAAAGTATGTGCTTGTTGTTCATCATAAACGACAACTTTACGAT CCTTACTAGTATTTAACCAAGCACTAATGAGAATGACATCGTCAGGTGGACTCCATTTGCGTCT TCGAGCTTTACGATCGGTTGTGTCTTGAACGAGGTTTGGACCATCACTCGTCCCACCAATACTA CTAAATTGGATACTGTATTATGGAAGATCCATGAAACTGGATGAGAAATTAAACGGAGTGTTTG GATCTCGAATGACTTATCTTTAGGGGGAAGGAGTCTCTCATATAGAGACCCTGATGAAAGTGGT CAAGTTTTTTGTTCTTACATCTTAGATTGAGGACCCGGTTTAGATGCGGTTGCCATCTCTCGCT GCTTCTGAAATCTATCTTTGGCTCTGAAAAGGACCTCATGGACCTCATCAGAGTGAGGCATTGT CGCTTTTCTCGTACTCTCAATCCATTGTTCAACTTTCTTATGAGGGCTAAGCAATCTAAGACGA TCTTTGTCATCCAAAACCTATAAAATAGAATAAATTTTACAATCAAAAGTCATAACCGAGATAA GGAAGCAACTTTTTTGCTCCATAATGTTTGATATGGTTAGTTACATTGGTATTTCGATGACTTA ATAAAACAAATAAAAGTTGGTAAAGAAGATGATTTTTTTGCGTACCTGCAGCTGCATAAGTTCA CATACAAGGCTGAGATCAGCTATAGATGGTTGCTTGCCCCCGAGTAAAAACTTGGCACTGCCCT TAAGCCAAAAAGTCTCTAGAGTGGACAGAGAGTTTGTTAGTATGTTCTCAGCTTCAGCAGCTGC TTTCGGATTCAGTGGAAGACCAAGAGCTGGAGCTAGAACGCTATTCAGAACATATCCAGCTGAG AGATTGTTAAATAACCGTAATCAGAAACATGAAGCCTTATTTGAATATACAACTAATTAACATC GATACTGTTATGAATATAATACATGCACCAGGGCGTAAATTGGTGTGATGCCAATCCAAAACGG AGTGAATCTTGGCTCTTTTGGAAAGATCATTCGGGTAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.525820526

Conservation Information
Conserved circRNAs	NA
PMCS	0.525820526

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of 5_circ_ag.4

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