Detail information of BGIOSGA016467_circ_g.1


General Information
CircRNA Name BGIOSGA016467_circ_g.1
ID in PlantcircBase osi_circ_014397
Alias Chr04:22459189_22460197(MH63RS2), Chr04:22402647_22403655(ZS97RS2), Chr04:22459189_22460197(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20170124-20171132  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA016467
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016467_circ_g.2 BGIOSGA016467_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016467-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCTGTTTCACAGGTTTAGTGGAACAATTATTGGTATTGGGAGTGTGCCAGCAATGTCAAAA
TCTCCATGGGCAGATTCTGACTGGAAATCTCTGAAGggacaacctaggaggcatctgcttacaa
ccggttggagtgtctttgttagctcaaaaagattggttgctggcgatgcatttatcttcctgag
gtacacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACAACCTAGGAGGCATCTGCTTACAACCGGTTGGAGTGTCTTTGTTAGCTCAAAAAGATTGG
TTGCTGGCGATGCATTTATCTTCCTGAGGTACACAATACTAAGCATGTAACTTGAAGGCATTAG
GTGCACTTGCATCTATCTCATGACTCAATTTAGTTGCGGATGAATCTAGTCTACAGTTATTACT
GGTTTCTTCCGCTAAATATCGTTGAATAACTTTCAGGGGTGAAAGTGGTGAGCTACGGGTTGGA
GTAAGGAGACTTATGAGACAAGTAAATAACATGCCATCATCTGTCATATCAAGCCACAGCATGC
ATCTTGGAGTCCTTGCAACAGCTTCCCATGCTATCTCCACTGGAACCCTCTTTTCTGTTTTCTA
CAAACCCAGGTTCAATAAATTCTCATTTTGGTTATGCCCTTTGTTTCTGGTTCTTTATTGTATT
GAGTTATGGTGCAAATTTTAATAGTAATGGTTGACGTTTAGACCTATATAAAACTGAATTACTG
AAATATGGCATTATTTGAATATTGTTTACTCTGCTGAGTGTATGATCATTATCAAAATAAACTT
ATGTATGATGATTTACCCATCCAGTCATGCATTGTTTTTGATAAAGTGGAGTAATACTTGGGTT
ATCCTAATTAGCATTATGATGTGCAAGTTTACATTATCTTGCAGACTAAACTTAATGTACATCT
ATTATGTTCCCAGAACAAGCCGGTCTGAGTTTGTTGTGAGCGTTAACAAGTACCTTGAAGCTAA
GAAGCAGAACTTGTCTGTTGGAATGAGGTTTAAGATGAGATTTGAAGGTGATGAAGCTCCTGAA
AGAAGGTACAATCTTGAGTTTCTTTCTACATAATTATGCTAGCTTTACTCCTGTAGTTTACGGT
GCATATCATAAACATTTCTGTTTCACAGGTTTAGTGGAACAATTATTGGTATTGGGAGTGTGCC
AGCAATGTCAAAATCTCCATGGGCAGATTCTGACTGGAAATCTCTGAAG
Conservation Information
Conserved circRNAs osa_circ_023939
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021