Detail information of AT2G05210_circ_g.1


General Information
CircRNA Name AT2G05210_circ_g.1
ID in PlantcircBase ath_circ_012840
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1892075-1892679  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G05210
Parent gene annotation Protection of telomeres protein 1a
Parent gene strand +
Alternative splicing AT2G05210_circ_g.2
Support reads 7
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05210.3:3
AT2G05210.2:3
AT2G05210.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCTATGCAGAGTATATCTTACAGAACAAAACCTTGCTCCGAAGTTTTTTCCTTCTTGAGAGAG
ATCAAGATAGGAAAACGCTTTGATTTGGTGTGCAGGattggatttgtacgctacggataattga
tgatacgtatccaagtcctggacttactgttaatgtatttagtaagactcttgaacaacttcct
caaatcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGGATTTGTACGCTACGGATAATTGATGATACGTATCCAAGTCCTGGACTTACTGTTAATGT
ATTTAGTAAGACTCTTGAACAACTTCCTCAAATCAAGAACCACGACGACATGATTCTGTTTACT
CGCATTAAGGTACAAAGACCTCTTCATTTTCCTTCTGTGTTTTGTGCAGGAGGTTATAAAGTTT
GGATTTTTATTGTGTAGATGCAAACTTTTGATAGTGGAGAAAGAGTAAATGCTGCTTGTAGTAG
ATGGGTTTCTTCCTTTGCCTTGTTCGAAGGTGTGGATTTTGTTTGTTACCAATGTAGTACCAAT
TTTCATGAAGAAGAAGCATTATACAAGAGTGCCATGGATGATTTACGCAAAGTTTTTGCGGGTT
GTAGCCAAGTTATTAAAGGTAACACTGTGAGCTTCTTTTGCTTTCAACTATGCATATAGTATAA
TGGCTTTGGATAGCTTGGAACGATTCTCATAAGCTTTCATTTACTGTTTTGGTACTTAGCTATG
CAGAGTATATCTTACAGAACAAAACCTTGCTCCGAAGTTTTTTCCTTCTTGAGAGAGATCAAGA
TAGGAAAACGCTTTGATTTGGTGTGCAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.12440343
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017