Detail information of Zm00001d053022_circ_g.4


General Information
CircRNA Name Zm00001d053022_circ_g.4
ID in PlantcircBase zma_circ_008240
Alias Zm04circ00088, GRMZM2G317652_C1
Organism Zea mays
Position chr4: 209728828-209730723  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI2
Parent gene Zm00001d053022
Parent gene annotation Transcription factor GTE12
Parent gene strand -
Alternative splicing Zm00001d053022_circ_g.3
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d053022_T007:7
Zm00001d053022_T003:6
Zm00001d053022_T005:7
Zm00001d053022_T006:7
Zm00001d053022_T001:7
Zm00001d053022_T002:7
Zm00001d053022_T004:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTTGATTTCTTGTCTAACAACGGAGCAATAACTCAAGACTTGGTAAATGGTGAAGCAGTGTC
CAAGACCCACAGAGCACGGGTCTTCCTCAGCCAAGCcttcttgctgcctcttttccagcctctc
cttttccaattgcaatttcacagggtctatattcttcccctggggcatcaaaacggcatgtcag
caacagct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1262
Transcript exons: 209728828-209728894,209729012-209729133,209729286-209729
345,209729414-209729468,209729572-209729675,209729783-20
9729831,209729919-209730723
CTTCTTGCTGCCTCTTTTCCAGCCTCTCCTTTTCCAATTGCAATTTCACAGGGTCTATATTCTT
CCCATGATCCAGAAGTGCCTTCTGTTGAGCCTTCACTATAGTCCCAGCAAAACGACTCCTGAGC
ATTGCTGCACGAAGAGCCCTGCTTGGTGATAAAGGTTCATCACAAAGGTAACTTTCCTCACCTT
GTACAGAGGAGGCGATAGGCGAAGTAGAAATGTCATTGCAAGACCATGAATCATTTCCAGTTGA
ACCAGAGCTGCGCTCAGTTTCTCGTGTACTTGAAATTTTAGCATTCTCCTTAGCAAAAGGAAAA
GTGCAATTTAAATATGCCTCTTTGTTGCCGGTAGGAAAAGAGTGGTTTAATGACCCCTCTTTGA
CACCAGCTGTTTGAACAGGTATATCTTTGGAAGAGGTATGTGCAGAGCTGCGCACGGAAAATTT
GATTTTTACTTTGGAGGATAATGCATCTGTCAGTGTCTTCTTTGCAAACGAATTTGAGCAAGGT
ACTGGCCCTCTTGCAGCCAAAGATTTAGGATTTGAGCAGGCAACCTGCCCTCTAGCAACTGTAG
ACTTCGAATCCACGATAGCTCGAACTTTTATGGCCTTTGTCTTCTGCTCTTGAACAAGGTTTCG
GCCTCTAAATTTCCTTTCTACTGATTCCCATTCTGAGTCAAATATTTCATTCAATTCTCTAGCG
AAAGCATGTACATCATTGCCTGGAGGATTATACTTCATAGCATTTGAAAATGTTAGCCTCACAT
CTGCTGCGAACTCCTCAATGCTTACATACTTCTTTTTTGTGAGTTTATTCTTAACAGTACCCAA
ATCCATTGGGTTGCGGATAACATCAAAGTAGTCAGGAATCTTATATAGATCTGGATCAACAGGA
TCTTTGAAAAGCCAACCACCTTTGTGATCGATGAGCTTCCTTACAATATTTCCACACAGCCTTA
TCATCCTGCTACTTTTCATACTTGCAGCCTTGAGATTATAAGATGACTGATGCTCGCATGTAGA
AATTGATGTCACCCCAGATTTTTTAGAGGGTTTGCTTCCCTCAACATCAGAATCTGTATCAGAG
CCTCCCAATTCAGTGCTTATATAAACTCCTCTCCTCTTCTTACAGGCTTGTGCCATCATTGTGT
TTGGCCAGAGAGTTTGATTTCTTGTCTAACAACGGAGCAATAACTCAAGACTTGGTAAATGGTG
AAGCAGTGTCCAAGACCCACAGAGCACGGGTCTTCCTCAGCCAAGC

Genomic sequence CTTCTTGCTGCCTCTTTTCCAGCCTCTCCTTTTCCAATTGCAATTTCACAGGGTCTATATTCTT
CCCCTGGGGCATCAAAACGGCATGTCAGCAACAGCTGCATCACTGCACAGAGATAAGCTTTGTC
CTCTGCAAAGCCAAATAGAAGATCACAAAGTTCAGCATATATTTTTGGAATATTACATGATCCA
GAAGTGCCTTCTGTTGAGCCTTCACTATAGTCCCAGCAAAACGACTCCTGAGCATTGCTGCACG
AAGAGCCCTGCTTGGTGATAAAGGTTCATCACAAAGGTAACTTTCCTCACCTGGAACTCACATG
AGAGCAAGCAGTACATTAGCCAAGAATTATATGGACAAAATCAAGTACACTAAGCTCCTAAATG
TTAAATTTTCATTGATTCCAGTAATAGGAATTAAAAAATAAGCAGATAAATTAAGGGAGAACAT
GTGAAATAACCTTGTACAGAGGAGGCGATAGGCGAAGTAGAAATGTCATTGCAAGACCATGAAT
CATTTCCTAGGATTTCAAGTATATTAGCAACACAGAAACCCTGGAATAACATTGTGCAGAAATG
CTCAACATACCAGTTGAACCAGAGCTGCGCTCAGTTTCTCGTGTACTTGAAATTTTAGCATTCT
CCTAAAGTTAGAAAATATAGCTTTAGATGAGTTACAAATTTGTTTATACTGTGAACAGATAATA
ATGAGTCAAAAAGATTGAGAAGGTAACTCATGCCCAATACCTTAGCAAAAGGAAAAGTGCAATT
TAAATATGCCTCTTTGTTGCCGGTAGGAAAAGAGTGGTTTAATGACCCCTCTTTGACACCAGCT
GTTTGAACAGGTATATCTGAATGAAAAAGAAAGCATTAACAATTACAACAATGAGTTCTAATTA
ACCTTAGGGTAAAAGCATGTCATGTAATGCATATAAGTAAGAAATTATGACATTGACACCTTTG
GAAGAGGTATGTGCAGAGCTGCGCACGGAAAATTTGATTTTTACCTGTACAAATAATAGATAGC
AGTACTTTTAAAATCACATTACCACCAGAGAAACAAATCAAGTGAATAAGAACATGTGTGGTCT
CACTTTGGAGGATAATGCATCTGTCAGTGTCTTCTTTGCAAACGAATTTGAGCAAGGTACTGGC
CCTCTTGCAGCCAAAGATTTAGGATTTGAGCAGGCAACCTGCCCTCTAGCAACTGTAGACTTCG
AATCCACGATAGCTCGAACTTTTATGGCCTTTGTCTTCTGCTCTTGAACAAGGTTTCGGCCTCT
AAATTTCCTTTCTACTGATTCCCATTCTGAGTCAAATATTTCATTCAATTCTCTAGCGAAAGCA
TGTACATCATTGCCTGGAGGATTATACTTCATAGCATTTGAAAATGTTAGCCTCACATCTGCTG
CGAACTCCTCAATGCTTACATACTTCTTTTTTGTGAGTTTATTCTTAACAGTACCCAAATCCAT
TGGGTTGCGGATAACATCAAAGTAGTCAGGAATCTTATATAGATCTGGATCAACAGGATCTTTG
AAAAGCCAACCACCTTTGTGATCGATGAGCTTCCTTACAATATTTCCACACAGCCTTATCATCC
TGCTACTTTTCATACTTGCAGCCTTGAGATTATAAGATGACTGATGCTCGCATGTAGAAATTGA
TGTCACCCCAGATTTTTTAGAGGGTTTGCTTCCCTCAACATCAGAATCTGTATCAGAGCCTCCC
AATTCAGTGCTTATATAAACTCCTCTCCTCTTCTTACAGGCTTGTGCCATCATTGTGTTTGGCC
AGAGAGTTTGATTTCTTGTCTAACAACGGAGCAATAACTCAAGACTTGGTAAATGGTGAAGCAG
TGTCCAAGACCCACAGAGCACGGGTCTTCCTCAGCCAAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.12831839
Functional Information
Coding potential Y
Potential coding position 209730673-209729012(+)
209730610-209730607(-)
Potential amino acid sequence MVKQCPRPTEHGSSSAKPSCCLFSSLSFSNCNFTGSIFFP*(+)
MMAQACKKRRGVYISTELGGSDTDSDVEGSKPSKKSGVTSISTCEHQSSYNLKAASMKSSRMIR
LCGNIVRKLIDHKGGWLFKDPVDPDLYKIPDYFDVIRNPMDLGTVKNKLTKKKYVSIEEFAADV
RLTFSNAMKYNPPGNDVHAFARELNEIFDSEWESVERKFRGRNLVQEQKTKAIKVRAIVDSKST
VARGQVACSNPKSLAARGPVPCSNSFAKKTLTDALSSKVKIKFSVRSSAHTSSKDIPVQTAGVK
EGSLNHSFPTGNKEAYLNCTFPFAKENAKISSTRETERSSGSTGNDSWSCNDISTSPIASSVQG
EESYLCDEPLSPSRALRAAMLRSRFAGTIVKAQQKALLDHGKNIDPVKLQLEKERLEKRQQEGL
AEEDPCSVGLGHCFTIYQVLSYCSVVRQEIKLSGQTQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Han et al., 2020;Zhang et al., 2019