Detail information of Os06g0485100_circ_g.1


General Information
CircRNA Name Os06g0485100_circ_g.1
ID in PlantcircBase osa_circ_042330
Alias NA
Organism Oryza sativa
Position chr6: 16542415-16543076  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRI-long
Parent gene Os06g0485100
Parent gene annotation Similar to Homeobox-like resistance. (Os06t0485100-01);Similar t
o Homeobox-like resistance. (Os06t0485100-02);Similar to Homeobo
x-like resistance. (Os06t0485100-03)
Parent gene strand -
Alternative splicing Os06g0485100_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AT
Number of exons covered Os06t0485100-01:3
Os06t0485100-03:3
Os06t0485100-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAAACCCTAATGGTAACCTGCTTGGGCTGGACGGCGACCTTGCCGGAGCGGGCGGGGGAGGA
GGTGAACTTGTCGGCGAGGGCCTGGATGACGGAGCGtcaacctggccgctctccaaagaaccct
tccctgattttgaacaccaaagatcaacaatcagaggataaaaaggaatgataaacaatgatca
tgatgcat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 278
Transcript exons: 16542415-16542445,16542736-16542901,16542996-16543076
TCAACCTGGCCGCTCTCCAAAGAACCCTTCCCTGAGGGCGAGCCGGAGTGCGCAGAGGCAGAGG
GCATAGCCCTGAAGGGAGGCGACTTGTGCTCGTCGGACCCCGTGGGCAGCATCTTGGTCTGCAT
CAGCGTCGGGGGGCCCCTGGAGCTCCTGGAGCGGTGCGAGTACCTCCGGTTCTGGAACCAGTTC
CACACCTGCTTGGGCTGGACGGCGACCTTGCCGGAGCGGGCGGGGGAGGAGGTGAACTTGTCGG
CGAGGGCCTGGATGACGGAGCG

Genomic sequence TCAACCTGGCCGCTCTCCAAAGAACCCTTCCCTGATTTTGAACACCAAAGATCAACAATCAGAG
GATAAAAAGGAATGATAAACAATGATCATGATGCATAGATGGAAGGTTACTAACATAGAACCAA
TACACGGATCTGACATATGGCCGAAGTATCTCATTACTTATAGGGTTAATTGGATCCATGACAT
TATAAATTTGCCTGTTTTGAAAAATACCATTACTATTCGTCTAGTCGGAACGGTGCCATTATAA
AATTGTTGAAACCGGAGATATACCACTACCTACTCCTAATAGCAAGAGTAACATGAGCAAATGA
CCTGAGGGCGAGCCGGAGTGCGCAGAGGCAGAGGGCATAGCCCTGAAGGGAGGCGACTTGTGCT
CGTCGGACCCCGTGGGCAGCATCTTGGTCTGCATCAGCGTCGGGGGGCCCCTGGAGCTCCTGGA
GCGGTGCGAGTACCTCCGGTTCTGGAACCAGTTCCACACCTGCGAGTGCGGCCGGATCGAGATG
AGGCGGCGAATTCCCCGCCAGGGAGGGGGAAGAGGAAGGAGGAGGGGGGAGGAAAACCCTAATG
GTAACCTGCTTGGGCTGGACGGCGACCTTGCCGGAGCGGGCGGGGGAGGAGGTGAACTTGTCGG
CGAGGGCCTGGATGACGGAGCG
Conservation Information
Conserved circRNAs NA
PMCS 0.120890697
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study