Detail information of AT4G24270_circ_g.3


General Information
CircRNA Name AT4G24270_circ_g.3
ID in PlantcircBase ath_circ_032505
Alias NA
Organism Arabidpsis thaliana
Position chr4: 12582108-12586850  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene AT4G24270
Parent gene annotation EMBRYO DEFECTIVE 140
Parent gene strand -
Alternative splicing AT4G24270_circ_g.1 AT4G24270_circ_g.2 AT4G24270_circ_g.4 AT4G24270_circ_g.5 AT4G24270_circ_g.6 AT4G24270_circ_g.7 AT4G24270_circ_g.8 AT4G24270_circ_g.9 AT4G24270_circ_g.10 AT4G24270_circ_g.11
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT4G24270.1:14
AT4G24270.2:14
AT4G24270.4:13
AT4G24270.3:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGCCACAAGGAAGGACTCAACGGAAATATGGCACTCATAGCTTCCCTTGCTTGTCTTAGCTT
TTCAAGGTTGGCTGTTTTCCTGAGAAGCTTAATGTAcatttccacgccgagtgaattctttttt
acccttctttggatttgaccgtgctatgctgatcttcttaccaaaaaacatctttctgttcttt
gctatagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTTCCACGCCGAGTGAATTCTTTTTTACCCTTCTTTGGATTTGACCGTGCTATGCTGATCTT
CTTACCAAAAAACATCTTTCTGTTCTTTGCTATAGCTGCTGCAAGGTGTTCATCATCCACAAAA
TCAGCATATGCCAGTCCCTGAGGGAAACAAGAGGATCAAGCAAGCTTATTAAGCCACCATATCA
GCATAATTCACTAAAACAGAAACTAGGAGTTTGTCTTATGCATCTAACTGCCATATATGGTGAA
CAGTTCCTGCTAATCATTTCAGATGGAAAAATTTATTACAAAACTTTCTTCCCTGCAACCCCTA
TAGAGAGTATAATTGAACAGAAGTTATCTGATGGCTGCAATTTTTAAGTCTCAACATGACTTCA
TCTAAACATGATCACATGGAAACAGGGAAATTCCCAGATTCATTAACAGTGACAGCAGAAGATG
ACATCACATGCAGAAGGTGTGTGTAAGAGAGAGACCCTTGGTTTTCCAGTGTCTTTGTGATGGA
GAATGCGAATGGAATCAACCCCACCATCATCACCAAAGAATTTACGTATATCTTCCTCTTGTGC
CTACCAACAACAATTAGTAGCTTAATATCTGAAAATCCCCACACAGTAGCTTTTTTCAGTAGAT
TGTCTTCGTAAATTTTACATGAAGCCTATATACTTACCTTGACACTGAGATTCGAAATAAAAGC
TGTACACTCGTCTCTATAAACTTTCGGCTTCAGTGGTTTGGCATCTTCTGTCTCTTCTTTATCT
GAATCAGCTGTTTTTCCATTCTCTGCTTTAACGTTTTTTGTTGCTGGTACAGTTGCACTCTGAC
CACCTAGGTCCACTTCTTTTTGACTTTTCCTCTTCTGCCGCTTAGCCAAAGACTCTTCTTCTAC
ATTCTGTTCTGCTTTTCTCTTTTGTGAGCTATGCTCTTTCAGACCAGCTGACGGTTTGACTGGT
GTAGACTCTTGTTGTAACCTCATCAATTGTAGCTCTTCCAAGCGTGGCATAACCTGCAGAATAA
AAATCAAGCAACTCGTATAATTTACAGCTTCCACAACTTTTTTTGCATTCTTTTTTAGCAAACA
ATGCATCGCTCTTATAACTGCCCATCAGGGTCAAATATAGGGAAACTGAACATAAGAAGCCAAG
AACATCACAGTAGCTATGAATCAAAAATTAAGTTAACAGATCGATCTAATGTATTTATCACATA
AGAGTTAACAAAAAAATTCAAACCCAACAAAATATATCAATATTCATCATATTCTGGAAATGCC
AAACAGTAAACAATACCTTTTGAACTGCTAGGTCAAAATGTTCCAAATCCCCATGCTCCCTCTC
AAAGCGCAACCATCCTTTGCATATGTCCTGGAAAATTGCTCTTCTTAGGAAGTGAGTATAGGCA
TTTAGAAATTAGAGATGACAACTCAGGCATACAGTGCTCTCATGTTTCAAAGAAATGTCATGTA
TTGTAAACATGCCTAAACCATCAAAAACAGAAAAACCCTCAATCTAAACGCGCTTGCATTGCAG
TTGCTCCATTTATACACTGTTTCTCAGTTTCTCTACTTTTCATTTAATAGACGGTCGTTTCAGT
TGCAAGTGAAGCTAAAGAATGTGTTTCGAGTCAAATAATCCTCCTTAGATAACAAGAAAAGAAG
TTACAGTAACACATTAAACAAGAAAGAATCGAGTGCATACTTCTGAGCCAGTTCCATCAAACTT
TCTTGTATAGCACCTCCGGTAAATAGACCTAGCTTCCTTTATATGCCCCAAATGCACTTCCATA
TCAATGTATGCATGCCAGGCTGCTAGCATCCCACCACTGGAGAGAACAAGGTAAGATGAACCAA
AGTGAACCAGATTGCCTTATGCTGACAAATGCTATAATTTGCCTGAATTATTTCAAGTTTAAAT
CTGTAATTAATCAATATAAAGGGTAGAGATTGCAAAACCTCTTCTTCAGAAAGCTATCCCAAAC
ACCTCGTGCGCCAGCTAGATCTTTTCCAATATTAAGTTCCAAGTTAGCCCAATAAGTATGCAAA
TGTAGCAAACTGTCTGTATTTTGCATGTGAGGCGTTAGGTAATCTGATGCTTGCTGACAGAAAG
AAACATTGAGTTAATTCGAGTGTTTCAGAAGATATCTAAATCAGGAGAAAAGCTACACAAAAGA
ACACTATTCTTACAGAAAAGATAATCCTATATAGACTCTTATATGGAAAGCTACGAAGAGAATG
CAATTAACTAAAAGAACTGCAAGGATACCAATATCTTGAAAGCTGAGAACAAGAATTTGAGAAT
ACTATTGATGGTAAAGGCAGCAGACAAACCTGAAAAGTTTCTCTTATCAGAGAATAGTCCAAAG
CCTCTAGCATCCTAGTTGATAACATTCTCCTTCTCAGGCCATCTACTCGAGTGAGGTATAAATC
CAGGTACTGATAAGAAACAACTCGTAAGAAATACGTGGATAGAGATTAATATATACATGCTAGA
AACTGAATAAATAATCATGAAAGCAAAGGTGTACCTCTTCAAAGGAGGAAAATGTGCACTGCAA
TGACTTCTCAAAGACCTGTACGCAACAATTTGAATAATAGAATATTCTCAGCATAACTTTCTGA
AAATCACATAGCATAACGCATCGGATATGGTAAGAGGAAGATGACAGACATAAATCAATGTTAG
GGCAAGTATCCTTTCCTTCACTATATTTCTTTTGTTTTTCAATTTTAACAAGTTGAGACTTACA
TCATAAATCTCTTTCTCGGATGCAGAACCACGCTCTAAAGCAAGTAAATAACGTGCCCAAAGAT
CTCCAGTCCATGGACAACTTCTAGTCGCCCTAGAATAGGCATGCGTTATAGCTTTTCCAACCTG
AAGCAGAAAGTCAATTATACAGATCAAGTAAAAATTGTAAGAAACAGCACCATAAAAAGACAAT
TTCAAGAAGATGATAGATAAAATGCCAAAAAAACGCTACACAACAAGTTCTTGACAGACCTTCA
AAGTTTTATCAAGATACACGGTGTAGTCTATCCACAAGTCACTTGAAACCGGGTATTCAGCCAC
AGCACGTTCATATATAGCTTGAACTCGGGTAGGATCTCCAGAAGTCTTCTCAAACTTTATATAA
TTCTACAAAGAAATAATTACAATCATCACGTTTTCATATAGATAACATCGTTTACTTGGTAAAG
CCAATAACAAGAACAAAAAGGATGCAACAGTAGCAAAAAAACATGCCCAAGTCTGCAGATTCCG
AATCTTTCACACAATATGAGCACTAATGGTAGGCATATGGAATCCAACTTCTACACAACATTTA
TGATATATATCAACTGCACGATAAACAATACGTACCATGAATTCCTGAAACTTTTCCGTGTCAG
ATAAATCTTGCTTAGATATGTTTTCTTCAAGATGGGCACGTTCACTATACATCTGCTGTGCCTT
CTTGTTTGCAACAGCAACCTGATGAGAAACCTTACTCAAATCATCAGATCCAATATCAAGGTCA
ATGCCCTGTTCCAACTCCCAAGTCTTGTAAGCAATAAGGGTGGAGCTCAAGTTTTCTAGAGGAA
CAGACAGGTGACGGTGGAATATGCTTCTGATCCTTTGTATCTGCTTATTTCTCTCCTGTAAAAT
AAAACTAAAAATTCATGATGCCACAAAAGAACTATAAAGAGATGTGCATAAACTGATTTATTTC
TACTTTAGAGCCTAGAGACCTAAATGATATTTACATAGCAACCACTATCTCTCGTTAATAACAA
GATGTTAGTTCTTTCCACTGAAAACTATGCGCAGCAACCCACTACCATACTTCTATTTCACTTA
GTAAAGGAATCATCCTAGAACACAATTCTTGCTAACATGCTGCTAGACTACAGTGAACGAATGT
AGATGAACAAAATCAAGAAATGGATCCAACCTCAATGTCAGCCTCGTCGATAGTGGCTAAGACA
CCTTGCTCAAATTCTCTATATCCTTCCCATATTCTATTGCCTTCAGTAACATGGAAGCCCGCAG
CCGGAATAGCACGTTCAAAAAGACTCCGCATTTTGGAAATACCTTCAGATGGGTATCCACGCAC
TGATGGATCAAATTCTAGCATAAAGCTCAGGTAGTCACACCAAAGAGATACAGACTGCATAAAA
GAAAAGCTATTAGCTTATTAATTCAATGTGGAACGAATTACTAGTTGAATGATCGATTATAAAG
TATCACTGTCTTTATAATCAATTGAGGAAGAAATTTGAAATACAAAGATAAATAACAGAACAAA
TCGATATAGCATACCAGAGTATTTATTCAGTCTATCTATCTCTAACAAAATGGTAATAATATAT
AAGCCTAACGAAGCTTTTTTATTCAAGCTGTTGGATCCAGTACAGAAGAGAACATACCTGATAA
TCAGAAAGTCCCCGTTCATAAAGCATCACAATTTCAGGCACATTCTCACTGCAAGGATAAATAT
AACAACAGTTTCAGAGGGTGTGTTAAAAATTGCATGCTTGAACTGTAACAAATAATGATCAAAG
GAAACCATCTGAAGCCTACAATAAAACCGGAAGTATGAGCCAAAGAAGCGCAAGAAAAAATTTA
CCTAGCGGCTAAAGACGCTTCATCCCTTGCCCATTCAAGCCACAAGGAAGGACTCAACGGAAAT
ATGGCACTCATAGCTTCCCTTGCTTGTCTTAGCTTTTCAAGGTTGGCTGTTTTCCTGAGAAGCT
TAATGTA
Conservation Information
Conserved circRNAs NA
PMCS 0.107186505
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017