Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT4G24270_circ_g.3 |
ID in PlantcircBase | ath_circ_032505 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr4: 12582108-12586850 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | KNIFE, PcircRNA_finder, circRNA_finder, find_circ |
Parent gene | AT4G24270 |
Parent gene annotation |
EMBRYO DEFECTIVE 140 |
Parent gene strand | - |
Alternative splicing | AT4G24270_circ_g.1 AT4G24270_circ_g.2 AT4G24270_circ_g.4 AT4G24270_circ_g.5 AT4G24270_circ_g.6 AT4G24270_circ_g.7 AT4G24270_circ_g.8 AT4G24270_circ_g.9 AT4G24270_circ_g.10 AT4G24270_circ_g.11 |
Support reads | 2 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT4G24270.1:14 AT4G24270.2:14 AT4G24270.4:13 AT4G24270.3:13 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.107186505 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |