Detail information of Os06g0108900_circ_g.1


General Information
CircRNA Name Os06g0108900_circ_g.1
ID in PlantcircBase osa_circ_042232
Alias NA
Organism Oryza sativa
Position chr6: 528482-528535  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0108900
Parent gene annotation Similar to H0613A10.3 protein. (Os06t0108900-01);Homeodomain-rel
ated domain containing protein. (Os06t0108900-02)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0108900-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGGTGGCCGGCGGCGGCGCGGCGCAGatgagggcggtggaggtgtcgttcgag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 54
Transcript exons: 528482-528535
ATGAGGGCGGTGGAGGTGTCGTTCGAGGCGGTGGCCGGCGGCGGCGCGGCGCAG

Genomic sequence ATGAGGGCGGTGGAGGTGTCGTTCGAGGCGGTGGCCGGCGGCGGCGCGGCGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.248458179
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study