Detail information of Os10g0477800_circ_g.1


General Information
CircRNA Name Os10g0477800_circ_g.1
ID in PlantcircBase osa_circ_007129
Alias NA
Organism Oryza sativa
Position chr10: 17859281-17861910  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os10g0477800
Parent gene annotation Similar to Nuclear transportin. (Os10t0477800-01);Similar to Imp
ortin-beta N-terminal domain containing protein. (Os10t0477800-0
2)
Parent gene strand +
Alternative splicing Os10g0477800_circ_g.2 Os10g0477800_circ_g.3 Os10g0477800_circ_g.4 Os10g0477800_circ_g.5
Support reads 2
Tissues root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0477800-02:4
Os10t0477800-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAACATAAATCAATTTATGTGAGGTTTATCTGTAGCTAACCTGATTGTTCCTTTTCAGGTTCT
GGAGGGTTTTGCTTCTTGGCTTCGTTTTTGTCATGGgtagctgacagcttacttcatgatgaaa
gtagtaatatggagactcaaatcttctgctctcaaaccctcagaagcaaggtaaataaattgat
atgtatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAGCTGACAGCTTACTTCATGATGAAAGTAGTAATATGGAGACTCAAATCTTCTGCTCTCAAA
CCCTCAGAAGCAAGGTAAATAAATTGATATGTATCACTGCTTCTCTTCTAATTATTTAAAAAAC
TCTGAAATTGGTCTAATTCTTCCTGTTATCTTTTAAATTATCCCAATACCAGGTACAAAGGGAC
TTTGAAGAATTACCTTCAGAAGCTTTCCGTCCGCTACAAGATTCTCTATATGTAAGCACCAGTT
TTTGAAGTTCTTGTTTTTCTTTTCTTATTAGCATATTATAATCAGTTCAACTAAATGTTGTATC
AAGTAGAATCAGTCTTCTATTTGGCTGCCATTTCTGTTTGATAATAGGCGTTATTTCACTTGCT
CAAAATAAAATAAAACCAATTTTTCAAAGTTATGTCATGTCATGTTCAGTGATGGATTTGTTTA
CCTTTACTAGTAAGATTTGGATAATCTTGTGAAGATCTTGTTTTGTTTCATTTAACTGTGATGT
ATCTGCAGGCATTGCTGAAAAAATTTAGTAAAGGGCCACAAAAAGTTAGAACACAGGTAATCTA
TACTACCTCCATTCCTTTGTACTTGTCATTTAGGATATTGATACAATCACCAGTACACAATTTT
GACTTATACCTTTTGTAATTATATACTCACAGCATACTAAAAATATAATCATATTAGTAGCAAA
AAAAAATATTAGTAGCAAAAAAATCTTAATACGGTCGTGTATATTAGTAGCAAAAAAAAATATA
TCAAAGTTTGATTGCACACATTCTAAGACCACATTTATTTGAGTATATAGCTTGTAATTAAGCA
ATCAATTTTGTATTTCACAGTTATAATGGCAAACTACCTTTTGTGCCATCTTCAGATTTGCATT
GCAATGGCTGCTCTTGCGGTGCATGTACCTGTAGAGGACTGGGGAGGTGGTGGGATTGTGAATT
GGCTAAGTGATGAAATGAACTCTCAACAAGACTTTATCCCAAGCTTCCTTGAGCTGCTAACTGT
TTTGCCACAGGTACATACATGTCTAGCCTCATATGGACTCCTATCATATACCCTATTGTTTCCA
TGTCGCTGAGTTCATCCTATCTTTATAATCCTATATAGGAGTGAACAGTTTTACTTCAAGTCTG
TCCTGTAGTTTGGTTAACTCATATAGAAGTACCATGAATCCTTCTGACACTGAAGGATTTGCGT
TAAAGAAAGCTGAAATATGATCTCAATGCCTTGTAAAATGTGTGCTATTATATTTTGTGCACAG
GAAGCACCAAAGTAGTACCATTTTTGTGGTTATTGTCTTGAGTAAAAGAAAATGAGTTGAAGTA
AAACAATTCATTTTTTTATTGTCCTTTTGCCATTTCCAAAAAAAAGAGAGATATTTTAGTAATA
GTAGATTGTACATGCTGATTGATGCTATTTCTGAATAATAAGTTAGACTTTTGATGAATCACAT
TAATGACTTTTGACATATTTTCTAAATATTATGAACCTGTAGCCAGATATCTATTTTAAATCAC
ATAAGTACTATTATGCTTGTAATTTTGCCATGTGCATATATGATCATGCTTGAATTTAGAGTTA
TGTACACCAGCTACCATGGTTCAAGTAGGCGCTAGACATTAGAGGGTCAGTGAGGCCGGTGCCT
AACGGTAGGAGCGTCTAGTTGCTGCCGCCAAGGCGCACCTAGGTCCCAGGACCAACTTGGCTAG
GGACTTTGAAGCAGTTAGCGAGCATATATGACATAAAAGAAAGACTGTTCACCATTTATATTGC
AAAACTAGATCCCCCAATGCAGAGCAGCTGCATAATGCACCATCAAATGCCAAATTGCTGCGGC
TACCTGGTTCCTAGAGCCAATTTTTAGGACACTGCCAGCTACTCAGATTTCTATAGCATATTCT
TCATTTTTCTTCAATGATGTCCTTTCAGGAATGTTCTAGTCATAAAATAGCAGCTCGTCCTGAA
AGGCGCCGACAGTTTGAGAATGACCTTCGTTCATCAGCCGAAGTTGCACTTAGTCTATTGACTG
CTTGCTTGGGTATTGATCAACTGAAAGAACAGGTCAATTTCCTTCTCTTCAAGATTGTTTTTCA
TTGGCACCTTAGGAGCTTAAGTGGCAAAGAAAATATTTTAAGTTTGCATGTTAGGATAAATATT
TTAAGCTTGCATGTTAGGATCTCTTCAGAGATAACAGGCAGTTTATTCACTGCAAAGTTATTCA
TAACTCATCTCCTGTGAAGCATCTATTACCACATTTCATTGGTTATATTATGACAGATGACATC
CTAGGCTAATAGAAAGGTTTGACTGGAGGGCTGGTTTATAATGTGCTATTCTCATTATCTTGGT
ATATGAGAATGGTGCTATTTTATGTTTCATGTCAATTTCATATTCCACTTTAATATACTTAGAT
GGTGAGAAACATTCAGCCTTTCCAGACAGCAATATCACATTCAGGCATGCTTTAATATGCTTGA
TCTCAACCCAAAAATGCATAAAATCTGCAATCTGTAAACATAAATCAATTTATGTGAGGTTTAT
CTGTAGCTAACCTGATTGTTCCTTTTCAGGTTCTGGAGGGTTTTGCTTCTTGGCTTCGTTTTTG
TCATGG
Conservation Information
Conserved circRNAs osi_circ_008518
PMCS 0.104661999
Functional Information
Coding potential Y
Potential coding position 17859318-17859281(+)
Potential amino acid sequence METQIFCSQTLRSKVQRDFEELPSEAFRPLQDSLYALLKKFSKGPQKVRTQICIAMAALAVHVP
VEDWGGGGIVNWLSDEMNSQQDFIPSFLELLTVLPQECSSHKIAARPERRRQFENDLRSSAEVA
LSLLTACLGIDQLKEQVLEGFASWLRFCHG*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017