Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0477800_circ_g.1 |
ID in PlantcircBase | osa_circ_007129 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 17859281-17861910 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | Os10g0477800 |
Parent gene annotation |
Similar to Nuclear transportin. (Os10t0477800-01);Similar to Imp ortin-beta N-terminal domain containing protein. (Os10t0477800-0 2) |
Parent gene strand | + |
Alternative splicing | Os10g0477800_circ_g.2 Os10g0477800_circ_g.3 Os10g0477800_circ_g.4 Os10g0477800_circ_g.5 |
Support reads | 2 |
Tissues | root, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0477800-02:4 Os10t0477800-01:6 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008518 |
PMCS | 0.104661999 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17859318-17859281(+) |
Potential amino acid sequence |
METQIFCSQTLRSKVQRDFEELPSEAFRPLQDSLYALLKKFSKGPQKVRTQICIAMAALAVHVP VEDWGGGGIVNWLSDEMNSQQDFIPSFLELLTVLPQECSSHKIAARPERRRQFENDLRSSAEVA LSLLTACLGIDQLKEQVLEGFASWLRFCHG*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |