Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G30980_circ_g.6 |
ID in PlantcircBase | ath_circ_015785 |
Alias | AT2G30980_C1 |
Organism | Arabidpsis thaliana |
Position | chr2: 13183632-13184342 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, CIRI2 |
Parent gene | AT2G30980 |
Parent gene annotation |
SKdZeta |
Parent gene strand | - |
Alternative splicing | AT2G30980_circ_g.1 AT2G30980_circ_g.2 AT2G30980_circ_g.3 AT2G30980_circ_g.4 AT2G30980_circ_g.5 |
Support reads | 2 |
Tissues | aerial, inflorescences, whole_plant, leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT2G30980.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.313253066 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13184331-13183634(-) |
Potential amino acid sequence |
MAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTT TRDELFLNLVMEYVPETLYRVLKHYTSSNQRMPIFYVKLYTYQIFRGLAYIHTAPGVCHRDVKP QNLLVDPLTHQCKLCDFGSAKVLTISYMAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRY KNRELQLMRLMDHPNVVSLKHCFFSTTTRDELFLNLVMEYVPETLYRVLKHYTSSNQRMPIFYV KLYTYQIFRGLAYIHTAPGVCHRDVKPQNLLVDPLTHQCKLCDFGSAKVLTISYMAERVVGTGS FGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTTTRDELFLNLV MEYVPETLYRVLKHYTSSNQRMPIFYVKLYTYQIFRGLAYIHTAPGVCHRDVKPQNLLVDPLTH QCKLCDFGSAKVLTISYMAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRL MDHPNVVSLKHCFFSTTTRDELFLNLVMEYVPETLYRVLKHYTSSNQRMPIFYVKLYTYQIFRG LAYIHTAPGVCHRDVKPQNLLVDPLTHQCKLCDFGSAKVL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Chu et al., 2017;Zhang et al., 2019 |