Detail information of AT2G30980_circ_g.6


General Information
CircRNA Name AT2G30980_circ_g.6
ID in PlantcircBase ath_circ_015785
Alias AT2G30980_C1
Organism Arabidpsis thaliana
Position chr2: 13183632-13184342  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, CIRI2
Parent gene AT2G30980
Parent gene annotation SKdZeta
Parent gene strand -
Alternative splicing AT2G30980_circ_g.1 AT2G30980_circ_g.2 AT2G30980_circ_g.3 AT2G30980_circ_g.4 AT2G30980_circ_g.5
Support reads 2
Tissues aerial, inflorescences, whole_plant, leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G30980.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGCCATTTGCCTGTAGACAGTGACAAGCACAATGATACCTGGAATACAATTCCGAATGATCC
TGTTCCAACAACACGTTCGGCCATGTAACTAATGGTcagtacttttgcacttccaaaatcacag
agcttacactgatgggtgaggggatcaacctacagaacatacagagaataagattacaatctag
tcaaggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTACTTTTGCACTTCCAAAATCACAGAGCTTACACTGATGGGTGAGGGGATCAACCTACAGA
ACATACAGAGAATAAGATTACAATCTAGTCAAGGTTACCAAAGACAAAACCCACAATAGATCAA
CGTACCAAAAGATTTTGTGGTTTCACATCTCTGTGGCAGACACCAGGAGCAGTATGGATATAAG
CCAAGCCTCTGAAGATCTGCACAACATATTTTATAAACAGTTTTAGGATAAACACAACAGAGTA
AAGAGTATTTATTGGGGAAAGAGTAGATAACAATGCATACTTGGTATGTGTAAAGTTTGACATA
GAAGATAGGCATCCGCTGGTTTGAACTAGTATAGTGCTTCAAAACCCGGTACAATGTCTCTGGT
ACATACTCCATAACGAGATTGAGGAAGAGCTCATCTCTAGTCGTTGTAGAGAAGAAACAATGCT
TCAAGGAAACCACATTTGGATGGTCCATTAGTCGCATTAATTGCAACTCTCGGTTTTTATAACG
GCGATCTTGCAAAACCTTCTTAATGGCTACTGATTCTCCAGTTTCCAAGCATTTTGCCTAGAAT
GGTAAGTTAACAATCTGATCAGAAAGGAAAGACAAAAAGCCATTTGCCTGTAGACAGTGACAAG
CACAATGATACCTGGAATACAATTCCGAATGATCCTGTTCCAACAACACGTTCGGCCATGTAAC
TAATGGT
Conservation Information
Conserved circRNAs NA
PMCS 0.313253066
Functional Information
Coding potential Y
Potential coding position 13184331-13183634(-)
Potential amino acid sequence MAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTT
TRDELFLNLVMEYVPETLYRVLKHYTSSNQRMPIFYVKLYTYQIFRGLAYIHTAPGVCHRDVKP
QNLLVDPLTHQCKLCDFGSAKVLTISYMAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRY
KNRELQLMRLMDHPNVVSLKHCFFSTTTRDELFLNLVMEYVPETLYRVLKHYTSSNQRMPIFYV
KLYTYQIFRGLAYIHTAPGVCHRDVKPQNLLVDPLTHQCKLCDFGSAKVLTISYMAERVVGTGS
FGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTTTRDELFLNLV
MEYVPETLYRVLKHYTSSNQRMPIFYVKLYTYQIFRGLAYIHTAPGVCHRDVKPQNLLVDPLTH
QCKLCDFGSAKVLTISYMAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRL
MDHPNVVSLKHCFFSTTTRDELFLNLVMEYVPETLYRVLKHYTSSNQRMPIFYVKLYTYQIFRG
LAYIHTAPGVCHRDVKPQNLLVDPLTHQCKLCDFGSAKVL(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress
Other Information
References Chu et al., 2017;Zhang et al., 2019