Detail information of Zm00001d052840_circ_g.1


General Information
CircRNA Name Zm00001d052840_circ_g.1
ID in PlantcircBase zma_circ_001802
Alias circ823
Organism Zea mays
Position chr4: 202386503-202390539  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d052840
Parent gene annotation Phosphatidylinositol/phosphatidylcholine transfer protein SFH13
Parent gene strand +
Alternative splicing NA
Support reads 5
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d052840_T018:13
Zm00001d052840_T020:4
Zm00001d052840_T008:13
Zm00001d052840_T012:11
Zm00001d052840_T003:12
Zm00001d052840_T004:13
Zm00001d052840_T013:12
Zm00001d052840_T006:13
Zm00001d052840_T001:13
Zm00001d052840_T010:13
Zm00001d052840_T015:12
Zm00001d052840_T009:9
Zm00001d052840_T007:13
Zm00001d052840_T005:13
Zm00001d052840_T023:9
Zm00001d052840_T011:13
Zm00001d052840_T016:13
Zm00001d052840_T019:13
Zm00001d052840_T021:13
Zm00001d052840_T002:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGCTTGCTGGTCAGGTGCTGAACGCGACCGTGGCGAAGCAGAAGGCGCTGGTGGAGGAGGTG
GCTCTGGAGTCTGTGCAGGAGCTGCCTAGAGCCAAGgacagtggcggtagaagattgggtgcgg
gagcgcgacgtctcagctgggctatccaggaatccagaatttacttcggtggcgaggatgtctg
gtaggggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACAGTGGCGGTAGAAGATTGGGTGCGGGAGCGCGACGTCTCAGCTGGGCTATCCAGGAATCCA
GAATTTACTTCGGTGGCGAGGATGTCTGGTAGGGGGAGAAGCGATTCCTCTTCTTTGTTTGGGG
AAGCAAAACAGCATCTTTTTTCATGGGATGATTAGCGCGGCGCCGTGCCCAATCTGTGCCTGCA
GTGAGCCATGCGCAGGACATTGAAATATCGCTGTGCGACGGCAACTCGGAGGACGAGCGGCGGC
GGCGCAAGATCGGCTCGCTGCGGCGGAAGGCCATCCACGCGCTCAAGAAGCGAGGGAGGCGTCG
CGTCGACTCCCGCTTCCCGCCGCCGGCCATTTCCATCGAGGACGTCCGCGACGCGGAGGAGGAG
CGCGCTGTCGCCTCCTTCCGGGAGCGGCTCGCGGCGCACGGCCTCCTCCCCGAGAAGCACGATG
ACTACCACATGATGCTAAGGTTGCATTAAATCCCGTCCCTTGCTGTCGTTGCCTGCGTTTGGCC
GTGGTTTGTTGAATGCCGGTATCCAGTATTCCAGTATTTGAAACTCGCATCGCCTTGTCAATGC
CTGGTTCAGGTTCCTCAAGGCCAGAAAGTTCGAAGCCGAGAAGGCAATGCAGATGTGGTCAGAG
ATGCTGAAATGGAGGAAAGAGTTCGGAACTGACACCATCCTTGAGGTGATCACTTTGAAGTCTG
CACTGCAAGCAATTCTTGGGAAATACTAATCTTTGTTTGGTGTACTAACAATCTGCTGTGACTT
CATGCGTCCAGGATTTTGATTTTGAGGAACTGGATGATGTGCTACGCTACTACCCTCAGGGCTA
CCATGGTGTTGACCGCCAAGGCCGGCCGGTGTACATTGAGAGGCTAGGGAAGGTGGATCCGAAC
AACCTTATGCAGATCACGTCAGTGGATCGCTACATCAAGTACCATGTCCAGGAGTTTGAGAGGG
CCTTCAGGGAGAGGTTCCCTGCCTGCACATTAGCTGCTAAGAGGCACATTGACTCCACCACTAC
CATCTTGGACGTCCAGGGTGTGGTATGTGAACGATTCAGTTTGAGCTGTGCGAACAGAACACAG
ATCTGTTCTGTATGTAGTTTTTTTTTAATCTGGTTGTATTCTGCAGGGGTTTAAGAATTTCTCC
AGGACTGCTAGAGAACTTGTAAACCGAATGCAGAAGATTGATAGCGATTATTATCCTGAGGTAA
TTATACTTTTTGAAGGTGTATTATGTTGTTGGGACTTTTGCCTGGTGATCCAATCAAGTAAAAT
GTTATAAATGCAGACACTCCACCAAATGTTTGTTGTGAACGCTGGCAGTGGATTCAAGTGGATC
TGGAACAGTGTGAAGGGCTTCCTTGACCCAAAAACTTCATCCAAGATTCATGTGAGTTCCAGCA
TTTATATACCATCCTTAGTGCAAACTTGTTTGGTATCGCAATCTTTAGTTTTCTTTTTCTTCTT
ACTTAGGTGCTCGGTTCGAACTACCAGAGTAGGCTTCTTGAAGTAATAGATTCGAGGTAGGTTT
GTACTCAAGGGTTGCATAACCCATTCTCTTCATAAGATTCAGCCCTCAACCTGTAATAATGCTT
GTATTTTCTAATAATGCTTGTATTTTCTCAGTGAGTTGCCAGAATTCCTTGGTGGTTCATGCAC
ATGTAGTGACAAGGGTGGTTGCCTTGGATCGAACAAAGGGCCATGGAATGATCCTTATATATTG
AAGGTACCCTTTACTGCTTCGTGTTTACATGAAAATAATTCATCTAGATGCTGTCCTTGTTTTT
CTATGTACTGAAGGATATATTATTTGTAGCTGATCCACAATTTGGAAGCTGGATGCATGAGGGA
AACCACCAAACCCGTTTCTGAGGGCGGAGAAAGAAGCAGCTCTTCCTTTCGGTTGGAACAGATG
AAAGTAAAATTCTAAAATTACAGCCTTCATCAGTAGTAATTCAGGAAACTGGTTGCTTTTCAGT
AATTCAGTAAGCTGGTTGCTTTTCTGGATTCTTGTTCTAAACTACTACTATATTTGCCTCTTTC
AGTGGCAGGGCATGTTAAGCGATACATCAAATGCTGAATCAGGATCCGATGTTGATGATTTTGG
TCCATCATTTGTTCATAAAGTTTCAGGCTATGGTTGCTTGACTCCGGTTCGTGAGGAGGTAAGT
TTATATGTCTGCCTTTGTTCTTACAGTTGGGTCCGCTTTTCCCTGTGCTATTAGTCTTATGAAC
CGCATTGGTCATGCTGTCCTGCTTGTGTCCATGACTCCATGGCACGTTGCATTATATTGATTTT
TCGTATTTATTTCTACCAAAGGTAAAGGGCACAGATTGTGCAACATACTTGAGCTGCGATGATC
AAAGTCACCCGGATATGGTTCCTGAATTTTACCATGGAGTGCAACGGACTACTGAAATGGTGCA
GAAACAAATGGCTGATTTCAGGCAATATTCCACCAACAGAAGGCCTCGTGAATTAGGTATCTTA
TTTTCCTATCGTTCCGGGTAATTGAATTCTGAACCTGTAGTTGTTTGTTAACATTTAATAAAGA
GTAAGGCCATTGAAGATGGTGTATGATTTTCTAGTGTCATGTCGCGTTGAAGCTCTGTAACCAT
GAATTTTCTGTTTGTTTGCTACTGCATAAAACACCATCAGCCATACATTCCCTGGTACCATAAG
ACTTTAAACCCTAGTAAATGGTAGTTGAATTTCTACTGCAAAGATGGCTGTCAGCCATACATTC
CCTGGTACCACAGACATAAAACTCTAGTAAATGTTAGTTGAATTTCTACTGCAAAGATGGCTGT
CAGACATACATTCCCCGGTACCACAGACATAAAATTGTAGTGAATGATAGTTGAATTTCTACTG
CAAAGATGGCTGTCAGCCATACATTCCCTGGTACCACAGACCATAAAGCTCTATCTAGTAAATG
GCAGTTGAATTTCTACTGCAAAGATGGCTGTTATTGTCCAGGGGACAGAAGCGTGGTACCTGTC
AGGTGTGTTGCTGTATGGTCTTTGGTGTCCCTCTTATGTAGGACTGGTTCATTTACTGTGATGT
GTACTTGGTATGTCGGTTTGACTCATGGTGGATCTGCGTCGTCGTCGTTAACATACCGCAGTGT
AAAATTTGCACGTGTTCTTCTGCCTGCTAGAGTTACAAAACGAAAACCTTGATTCATTGCAGTG
TGGAAGCAAACAATTGGTTCCTGCTAGTTTGTTAGCCATACTCACTGAATAGCACTAATATGCT
CAATTTGATTCCTTCCCCCCTGGTTCACTTTCTCTGCGTTCTTTCTCTTGTTACGCGGTGGCAA
TCTTAATCTTAGCAAGAACCTTTTTGCTGGAATAACCAAACATGTCTTTTTTTTACACTGCCTC
GATTATCTGCAGCCACATTGTTAAAACGTTCTGTTACTTAATTCTCAGGGAACGGCTCTCTTAA
TGCCAATGGTACAGCAGCTGCTCAGAGGGGCTGGGAAGACGTGGCGAAGCTAGTAGTCACAGCC
TTGATCAAGCTCTTCTCCTTCATCCGGCTGTTCCTTTCCAGAGCCGCCGAGAGTAGGCTAGAGA
AGGTCCGTCGCACTGCCCCACCACCAGCAGCAGAGAAGCCAAAGCCGCCCCGAGCCGTCAGCGA
AGAAGAGGTGCGCGCCTGCCTGCAGCGCCTGGACAGTCTCGAGTCGCTGTGCGGCCACCTTGCC
ACCAGGCCTGCGCAGATCCCGGAGGACAAAGAGCGCGTTCTGCTGAGCTCGTTCGAGCGGATCC
GGTCTGTTGAGGCTGACCTCGAGAGGACCAAAAGAGTAAGCTAAGTTGTTGTTATGGTTTATAT
ATATATCACGGAAACATCACAGCATAGTAGCAATCGGCGCCATTTGAAAAACCTGGCCTGGCCT
TCCTGCGTTTCCTGATCCTTCTCACTACTTTTGCTTGCTTGCTGGTCAGGTGCTGAACGCGACC
GTGGCGAAGCAGAAGGCGCTGGTGGAGGAGGTGGCTCTGGAGTCTGTGCAGGAGCTGCCTAGAG
CCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.02997237
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b