Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d033375_circ_g.4 |
ID in PlantcircBase | zma_circ_006869 |
Alias | Zm01circ00159 |
Organism | Zea mays |
Position | chr1: 261009233-261011322 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d033375 |
Parent gene annotation |
Golgi-body localisation protein domain ;RNA pol II promoter Fmp2 7 protein domain |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d033375_T006:2 Zm00001d033375_T008:1 Zm00001d033375_T035:2 Zm00001d033375_T005:2 Zm00001d033375_T007:4 Zm00001d033375_T012:2 Zm00001d033375_T041:2 Zm00001d033375_T043:2 Zm00001d033375_T044:2 Zm00001d033375_T018:2 Zm00001d033375_T001:2 Zm00001d033375_T003:2 Zm00001d033375_T038:2 Zm00001d033375_T045:2 Zm00001d033375_T013:2 Zm00001d033375_T017:2 Zm00001d033375_T002:2 Zm00001d033375_T009:2 Zm00001d033375_T040:2 Zm00001d033375_T014:3 Zm00001d033375_T016:2 Zm00001d033375_T011:2 Zm00001d033375_T004:2 Zm00001d033375_T010:2 Zm00001d033375_T015:2 Zm00001d033375_T033:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.161784159 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
261011261-261009235(-) 261009329-261011225(-) |
Potential amino acid sequence |
MLRSASGTTPAMKMYSNLPIYFQKGEISFGVGYEPSFADISYAFQVALRKVNLSTRASCSGLAV QLPKKERSLPWWDDMRYYLHGKIILYFNETKWKFLATTNPYEHVDKLQIVSEYMEIQQTDGRVD VSAKEFKIYISSVESITKNRRIKVPSRVPRPFIYAPLFSLNVVIDWQCESRNPLNHYLHALPVE GEPRKKVYDPFRSTYLSLRWNFSLRPLQSQYGNGPPPPFYGNNSMLRGIMSGSPCKMTDDDFPT MNLGAHDLAWVFKWWSLNYSPPHKLRSFSRWRRFGIPRATRSGNLSLDKVLVEFFFRVDATPCC IRHAPLSEDDDPAFGLTFKMSNLKYELCYSRGKQQYTFDCKRESLDLVYRGLDLHRPEVYLMRD NNLSSVENVSKVRTMVQQSHGKFVHDRCNMGNFQEKHEDGFLLSSDYITIRRQTRKADPERLMG WQDTGRSHEITYVRSEFEDDSESDHTLSEPSDDDDDFNVVLADNCQRVFVYGLRILWTIENRDA VWSWVGGISKAFEPPKPSPSRQYAQRKMIEERNAEGSKVPQDSSSSIHVGSPSVQHLDASGSSS SLHSKANRSSDVAVNHDIFDDSDKGGTAQYMVNVITPQFNLHSEEANATCFQPQIHQELYIGRW QKVTMLRSASGTTPAMKMYSNLPIYFQKGEISFGVGYEPSFADISYAFQVALRKVNLSTRASCS GLAVQLPKKERSLPWWDDMRYYLHGKIILYFNETKWKFLATTNPYEHVDKLQIVSEYMEIQQTD GRVDVSAKEFKIYISSVESITKNRRIKVPSRVPRPFIYAPLFSLNVVIDWQCESRNPLNHYLHA LPVEGEPRKKVYDPFRSTYLSLRWNFSLRPLQSQYGNGPPPPFYGNNSMLRGIMSGSPCKMTDD DFPTMNLGAHDLAWVFKWWSLNYSPPHKLRSFSRWRRFGIPRATRSGNLSLDKVLVEFFFRVDA TPCCIRHAPLSEDDDPAFGLTFKMSNLKYELCYSRGKQQYTFDCKRESLDLVYRGLDLHRPEVY LMRDNNLSSVENVSKVRTMVQQSHGKFVHDRCNMGNFQEKHEDGFLLSSDYITIRRQTRKADPE RLMGWQDTGRSHEITYVRSEFEDDSESDHTLSEPSDDDDDFNVVLADNCQRVFVYGLRILWTIE NRDAVWSWVGGISKAFEPPKPSPSRQYAQRKMIEERNAEGSKVPQDSSSSIHVGSPSVQHLDAS GSSSSLHSKANRSSDVAVNHDIFDDSDKGGTAQYMVNVITPQFNLHSEEANATCFQPQIHQELY IGRWQKVTMLRSASGTTPAMKMYSNLPIYFQKGEISFGVGYEPSFADISYAFQVALRKVNLSTR ASCSGLAVQLPKKERSLPWWDDMRYYLHGKIILYFNETKWKFLATTNPYEHVDKLQIVSEYMEI QQTDGRVDVSAKEFKIYISSVESITKNRRIKVPSRVPRPFIYAPLFSLNVVIDWQCESRNPLNH YLHALPVEGEPRKKVYDPFRSTYLSLRWNFSLRPLQSQYGNGPPPPFYGNNSMLRGIMSGSPCK MTDDDFPTMNLGAHDLAWVFKWWSLNYSPPHKLRSFSRWRRFGIPRATRSGNLSLDKVLVEFFF RVDATPCCIRHAPLSEDDDPAFGLTFKMSNLKYELCYSRGKQQYTFDCKRESLDLVYRGLDLHR PEVYLMRDNNLSSVENVSKVRTMVQQSHGKFVHDRCNMGNFQEKHEDGFLLSSDYITIRRQTRK ADPERLMGWQDTGRSHEITYVRSEFEDDSESDHTLSEPSDDDDDFNVVLADNCQRVFVYGLRIL WTIENRDAVWSWVGGISKAFEPPKPSPSRQYAQRKMIEERNAEGSKVPQDSSSSIHVGSPSVQH LDASGSSSSLHSKANRSSDVAVNHDIFDDSDKGGTAQYMVNVITPQFNLHSEEANATCFQPQIH QELYIGRWQKVTMLRSASGTTPAMKMYSNLPIYFQKGEISFGVGYEPSFADISYAFQVALRKVN LSTRASCSGLAVQLPKKERSLPWWDDMRYYLHGKIILYFNETKWKFLATTNPYEHVDKLQIVSE YMEIQQTDGRVDVSAKEFKIYISSVESITKNRRIKVPSRVPRPFIYAPLFSLNVVIDWQCESRN PLNHYLHALPVEGEPRKKVYDPFRSTYLSLRWNFSLRPLQSQYGNGPPPPFYGNNSMLRGIMSG SPCKMTDDDFPTMNLGAHDLAWVFKWWSLNYSPPHKLRSFSRWRRFGIPRATRSGNLSLDKVLV EFFFRVDATPCCIRHAPLSEDDDPAFGLTFKMSNLKYELCYSRGKQQYTFDCKRESLDLVYRGL DLHRPEVYLMRDNNLSSVENVSKVRTMVQQSHGKFVHDRCNMGNFQEKHEDGFLLSSDYITIRR QTRKADPERLMGWQDTGRSHEITYVRSEFEDDSESDHTLSEPSDDDDDFNVVLADNCQRVFVYG LRILWTIENRDAVWSWVGGISKAFEPPKPSPSRQYAQRKMIEERNAEGSKVPQDSSSSIHVGSP SVQHLDASGSSSSLHSKANRSSDVAVNHDIFDDSDKGGTAQYMVNVITPQFNLHSEEAN(-) MTFLMIRIKEGQPNIWLMLLHPNSTYTLKKQMQHVFNPKYTKSCILEDGKRSRCYVLPVVLRQQ *(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |