Detail information of Zm00001d033375_circ_g.4


General Information
CircRNA Name Zm00001d033375_circ_g.4
ID in PlantcircBase zma_circ_006869
Alias Zm01circ00159
Organism Zea mays
Position chr1: 261009233-261011322  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d033375
Parent gene annotation Golgi-body localisation protein domain ;RNA pol II promoter Fmp2
7 protein domain
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d033375_T006:2
Zm00001d033375_T008:1
Zm00001d033375_T035:2
Zm00001d033375_T005:2
Zm00001d033375_T007:4
Zm00001d033375_T012:2
Zm00001d033375_T041:2
Zm00001d033375_T043:2
Zm00001d033375_T044:2
Zm00001d033375_T018:2
Zm00001d033375_T001:2
Zm00001d033375_T003:2
Zm00001d033375_T038:2
Zm00001d033375_T045:2
Zm00001d033375_T013:2
Zm00001d033375_T017:2
Zm00001d033375_T002:2
Zm00001d033375_T009:2
Zm00001d033375_T040:2
Zm00001d033375_T014:3
Zm00001d033375_T016:2
Zm00001d033375_T011:2
Zm00001d033375_T004:2
Zm00001d033375_T010:2
Zm00001d033375_T015:2
Zm00001d033375_T033:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATTGCTGGCGTAGTACCACTGGCAGAACGTAGCATCGTGACCTTTTGCCATCTTCCAATATA
CAACTCTTGGTGTATTTGGGGTTGAAAACATGTTGCatttgcttcttcagagtgtaggttgaat
tggggtgtaataacattaaccatatattgggctgtccctcctttatccgaatcatcaaaaatgt
catgattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTTGCTTCTTCAGAGTGTAGGTTGAATTGGGGTGTAATAACATTAACCATATATTGGGCTGTC
CCTCCTTTATCCGAATCATCAAAAATGTCATGATTTACTGCATTTACAGTACAAGCTCAAGATC
AACTAAGTTCAGAATAGTTTAAAATAATTACAGTTTTAGCTTTTGATGATGGACTCAGACAGAA
ATGAGATGGCCAAAACTTTCCACTTATGCCCCACTATGAAAAACATATATAGCAAAAATAAGCA
TACCAGCCACATCAGAGGAGCGATTGGCTTTACTATGCAACGAGGAAGATGAACCCGAAGCATC
CAGATGTTGCACTGATGGAGAACCCACATGTATGGAAGAGCTGGAATCTTGCGGCACCTTGGAG
CCCTCAGCATTCCTTTCTTCAATCATCTTTCTTTGTGCATATTGTCGTGAAGGAGAGGGTTTTG
GAGGCTCAAATGCTTTGGAAATTCCTCCAACCCACGACCAAACCGCGTCTCGATTCTCAATAGT
CCATAAAATCCTAAGGCCATAAACAAATACTCTTTGGCAATTGTCAGCAAGCACCACATTAAAA
TCATCGTCGTCGTCGCTAGGCTCAGATAGAGTGTGGTCACTTTCACTGTCATCCTCAAACTCAG
ACCTAACATATGTTATCTCATGACTCCTCCCAGTATCCTGCCATCCCATAAGTCTTTCAGGATC
TGCTTTACGTGTTTGCCTTCTTATCGTGATATAATCTGAAGACAAGAGGAAGCCATCCTCATGC
TTTTCTTGGAAATTACCCATGTTGCATCTGTCATGAACAAATTTTCCATGTGACTGTTGGACCA
TAGTCCTTACTTTGGATACATTTTCAACTGAAGACAAATTGTTATCTCGCATCAAATAAACCTC
CGGCCTGTGAAGATCCAGACCACGATAAACAAGGTCCAGTGATTCACGTTTACAATCAAATGTG
TACTGTTGTTTACCTCGACTGTAACATAACTCGTACTTCAAATTTGACATCTTAAACGTCAAAC
CAAAAGCAGGGTCATCATCCTCACTTAAAGGTGCATGCCTTATGCAACAGGGAGTAGCATCAAC
ACGGAAAAAGAATTCAACCAAAACTTTGTCCAGCGAGAGGTTACCAGATCTAGTAGCCCGAGGA
ATTCCAAAACGACGCCATCTAGAGAAGGAACGAAGTTTGTGAGGGGGGCTGTAATTCAAGCTCC
ACCATTTGAAAACCCAAGCAAGGTCATGAGCTCCCAGGTTCATGGTAGGGAAGTCATCATCAGT
CATTTTGCAAGGACTACCAGACATGATCCCACGGAGCATTGAATTATTTCCATAAAAGGGAGGT
GGTGGGCCATTACCATACTGGGATTGCAATGGTCTGAGGGAGAAGTTCCACCTAAGAGAGAGAT
AAGTAGATCGAAATGGATCATAAACTTTCTTCCGAGGTTCCCCCTCAACAGGGAGTGCATGCAA
ATAATGATTCAATGGATTCCTAGATTCGCACTGCCAATCAATAACCACATTTAGGGAGAATAGA
GGAGCATATATAAAAGGTCTGGGCACACGAGATGGAACTTTTATGCGGCGGTTCTTTGTAATAC
TCTCTACGCTGCTTATGTATATCTTGAATTCTTTCGCAGAAACATCCACACGACCATCAGTTTG
CTGGATCTCCATGTATTCAGAGACAATTTGGAGTTTATCCACATGCTCATAAGGATTAGTTGTT
GCCAGGAACTTCCATTTGGTCTCATTGAAATATAAAATTATCTTTCCATGCAAGTAGTATCTCA
TGTCATCCCACCATGGTAAGCTGCGCTCCTTTTTAGGCAGTTGGACTGCTAGACCAGAACAGCT
TGCTCTAGTGCTAAGGTTAACTTTCCGCAGGGCTACTTGAAATGCATAGCTTATATCAGCGAAA
GATGGCTCATAACCAACTCCAAAAGATATCTCTCCCTTCTGGAAATAAATAGGTAAATTAGAGT
ACATTTTCATTGCTGGCGTAGTACCACTGGCAGAACGTAGCATCGTGACCTTTTGCCATCTTCC
AATATACAACTCTTGGTGTATTTGGGGTTGAAAACATGTTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.161784159
Functional Information
Coding potential Y
Potential coding position 261011261-261009235(-)
261009329-261011225(-)
Potential amino acid sequence MLRSASGTTPAMKMYSNLPIYFQKGEISFGVGYEPSFADISYAFQVALRKVNLSTRASCSGLAV
QLPKKERSLPWWDDMRYYLHGKIILYFNETKWKFLATTNPYEHVDKLQIVSEYMEIQQTDGRVD
VSAKEFKIYISSVESITKNRRIKVPSRVPRPFIYAPLFSLNVVIDWQCESRNPLNHYLHALPVE
GEPRKKVYDPFRSTYLSLRWNFSLRPLQSQYGNGPPPPFYGNNSMLRGIMSGSPCKMTDDDFPT
MNLGAHDLAWVFKWWSLNYSPPHKLRSFSRWRRFGIPRATRSGNLSLDKVLVEFFFRVDATPCC
IRHAPLSEDDDPAFGLTFKMSNLKYELCYSRGKQQYTFDCKRESLDLVYRGLDLHRPEVYLMRD
NNLSSVENVSKVRTMVQQSHGKFVHDRCNMGNFQEKHEDGFLLSSDYITIRRQTRKADPERLMG
WQDTGRSHEITYVRSEFEDDSESDHTLSEPSDDDDDFNVVLADNCQRVFVYGLRILWTIENRDA
VWSWVGGISKAFEPPKPSPSRQYAQRKMIEERNAEGSKVPQDSSSSIHVGSPSVQHLDASGSSS
SLHSKANRSSDVAVNHDIFDDSDKGGTAQYMVNVITPQFNLHSEEANATCFQPQIHQELYIGRW
QKVTMLRSASGTTPAMKMYSNLPIYFQKGEISFGVGYEPSFADISYAFQVALRKVNLSTRASCS
GLAVQLPKKERSLPWWDDMRYYLHGKIILYFNETKWKFLATTNPYEHVDKLQIVSEYMEIQQTD
GRVDVSAKEFKIYISSVESITKNRRIKVPSRVPRPFIYAPLFSLNVVIDWQCESRNPLNHYLHA
LPVEGEPRKKVYDPFRSTYLSLRWNFSLRPLQSQYGNGPPPPFYGNNSMLRGIMSGSPCKMTDD
DFPTMNLGAHDLAWVFKWWSLNYSPPHKLRSFSRWRRFGIPRATRSGNLSLDKVLVEFFFRVDA
TPCCIRHAPLSEDDDPAFGLTFKMSNLKYELCYSRGKQQYTFDCKRESLDLVYRGLDLHRPEVY
LMRDNNLSSVENVSKVRTMVQQSHGKFVHDRCNMGNFQEKHEDGFLLSSDYITIRRQTRKADPE
RLMGWQDTGRSHEITYVRSEFEDDSESDHTLSEPSDDDDDFNVVLADNCQRVFVYGLRILWTIE
NRDAVWSWVGGISKAFEPPKPSPSRQYAQRKMIEERNAEGSKVPQDSSSSIHVGSPSVQHLDAS
GSSSSLHSKANRSSDVAVNHDIFDDSDKGGTAQYMVNVITPQFNLHSEEANATCFQPQIHQELY
IGRWQKVTMLRSASGTTPAMKMYSNLPIYFQKGEISFGVGYEPSFADISYAFQVALRKVNLSTR
ASCSGLAVQLPKKERSLPWWDDMRYYLHGKIILYFNETKWKFLATTNPYEHVDKLQIVSEYMEI
QQTDGRVDVSAKEFKIYISSVESITKNRRIKVPSRVPRPFIYAPLFSLNVVIDWQCESRNPLNH
YLHALPVEGEPRKKVYDPFRSTYLSLRWNFSLRPLQSQYGNGPPPPFYGNNSMLRGIMSGSPCK
MTDDDFPTMNLGAHDLAWVFKWWSLNYSPPHKLRSFSRWRRFGIPRATRSGNLSLDKVLVEFFF
RVDATPCCIRHAPLSEDDDPAFGLTFKMSNLKYELCYSRGKQQYTFDCKRESLDLVYRGLDLHR
PEVYLMRDNNLSSVENVSKVRTMVQQSHGKFVHDRCNMGNFQEKHEDGFLLSSDYITIRRQTRK
ADPERLMGWQDTGRSHEITYVRSEFEDDSESDHTLSEPSDDDDDFNVVLADNCQRVFVYGLRIL
WTIENRDAVWSWVGGISKAFEPPKPSPSRQYAQRKMIEERNAEGSKVPQDSSSSIHVGSPSVQH
LDASGSSSSLHSKANRSSDVAVNHDIFDDSDKGGTAQYMVNVITPQFNLHSEEANATCFQPQIH
QELYIGRWQKVTMLRSASGTTPAMKMYSNLPIYFQKGEISFGVGYEPSFADISYAFQVALRKVN
LSTRASCSGLAVQLPKKERSLPWWDDMRYYLHGKIILYFNETKWKFLATTNPYEHVDKLQIVSE
YMEIQQTDGRVDVSAKEFKIYISSVESITKNRRIKVPSRVPRPFIYAPLFSLNVVIDWQCESRN
PLNHYLHALPVEGEPRKKVYDPFRSTYLSLRWNFSLRPLQSQYGNGPPPPFYGNNSMLRGIMSG
SPCKMTDDDFPTMNLGAHDLAWVFKWWSLNYSPPHKLRSFSRWRRFGIPRATRSGNLSLDKVLV
EFFFRVDATPCCIRHAPLSEDDDPAFGLTFKMSNLKYELCYSRGKQQYTFDCKRESLDLVYRGL
DLHRPEVYLMRDNNLSSVENVSKVRTMVQQSHGKFVHDRCNMGNFQEKHEDGFLLSSDYITIRR
QTRKADPERLMGWQDTGRSHEITYVRSEFEDDSESDHTLSEPSDDDDDFNVVLADNCQRVFVYG
LRILWTIENRDAVWSWVGGISKAFEPPKPSPSRQYAQRKMIEERNAEGSKVPQDSSSSIHVGSP
SVQHLDASGSSSSLHSKANRSSDVAVNHDIFDDSDKGGTAQYMVNVITPQFNLHSEEAN(-)
MTFLMIRIKEGQPNIWLMLLHPNSTYTLKKQMQHVFNPKYTKSCILEDGKRSRCYVLPVVLRQQ
*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020