Detail information of AT3G61420_circ_g.3


General Information
CircRNA Name AT3G61420_circ_g.3
ID in PlantcircBase ath_circ_028581
Alias At_ciR2451, AT3G61420_C3
Organism Arabidpsis thaliana
Position chr3: 22727471-22729216  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, MapSplice, PcircRNA_finder, find_circ, CIRI2
Parent gene AT3G61420
Parent gene annotation Probable RNA polymerase II transcription factor B subunit 1-3
Parent gene strand -
Alternative splicing AT3G61420_circ_g.1 AT3G61420_circ_g.2 AT3G61420_circ_g.4 AT3G61420_circ_g.5 AT3G61420_circ_g.6 AT3G61420_circ_g.7 AT3G61420_circ_g.8 AT3G61420_circ_g.9 AT3G61420_circ_g.10 AT3G61420_circ_g.11 AT3G61420_circ_g.12 AT3G61420_circ_g.13 AT3G61420_circ_g.14 AT3G61420_circ_g.15 AT3G61420_circ_g.16
Support reads 3/2
Tissues leaf/root, leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G61420.1:8
AT3G61420.2:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCAGCATGACGATTAAGATCTTGTAAAAGTGACCTCTTAAGCTGGTCATTCTGTGGTTCAAT
AATGTCATTGGTGCCATCGCGCTGGATCCCGTGGTCctgttgcattggacgaactagtaaggaa
acttgatgccggagatcagactgcaccgactgtttcattgcctggtttacattcggtataatat
tacggaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 318
Transcript exons: 22727471-22727501,22728134-22728200,22728343-22728376,22
729031-22729216
CTGTTGCATTGGACGAACTAGTAAGGAAACTCATGTATAACTTCATCCTTAGTGGACTTTGGTA
ATCTGTCCAGAAAGCTCTCTTGCGGGTTCTTCCCCCTCAAAGGAAACTTCAGGTTTAATCAACG
GATCGGCTATTTTTTATACTGTTACACAAAACACCAGATGAAACAATCAGAGTTGAAAGTGTTT
ACTGATGCATCTTCCTTCCAATACAACAGCAGCATGACGATTAAGATCTTGTAAAAGTGACCTC
TTAAGCTGGTCATTCTGTGGTTCAATAATGTCATTGGTGCCATCGCGCTGGATCCCGTGGTC

Transcript length: 347
Transcript exons: 22727471-22727537,22728134-22728209,22729013-22729216
CTGTTGCATTGGACGAACTAGTAAGGAAACTTGATGCCGGAGATCAGACTGCACCGACTGTTTC
ATTCATGTATAACTTCATCCTTAGTGGACTTTGGTAATCTGTCCAGAAAGCTCTCTTGCGGGTT
CTTCCCGAGAATATTGTTGGGAAGTCATTTGATGGCTATTTTTTATACTGTTACACAAAACACC
AGATGAAACAATCAGAGTTGAAAGTGTTTACTGATGCATCTTCCTTCCAATACAACAGCAGCAT
GACGATTAAGATCTTGTAAAAGTGACCTCTTAAGCTGGTCATTCTGTGGTTCAATAATGTCATT
GGTGCCATCGCGCTGGATCCCGTGGTC

Transcript length: 792
Transcript exons: 22727471-22727539,22727737-22727784,22727917-22727994,22
728135-22728248,22728344-22728517,22728606-22728733,2272
8853-22728909,22729093-22729216
CTGTTGCATTGGACGAACTAGTAAGGAAACTTGATGCCGGAGATCAGACTGCACCGACTGTTTC
ATTGCATCGAGTAGTGAATAAGTATTGGACATTGCATCCTTCAGTTTACCAACCTTGGTACTAA
GATATGTCGTTGTTATTGGGTAAGATGACCAAAAATGTCTCACTAATTCTTGTATTGATGTCCA
GTGATGTATAACTTCATCCTTAGTGGACTTTGGTAATCTGTCCAGAAAGCTCTCTTGCGGGTTC
TTCCCGAGAATATTTTTGGCAGTTGAGATAGTTCGGGTCAACGAACTGAAAACCTCAAAGGAAA
CTTCAGGTTTAATCAACGGATCACTTAATCCCGTCATTCTAATCACCAAAATGGATTCTTTTAG
TAATCCATAAGCTTCATGGACATTTCTTTTTGACGCCTTTGCTCCTCTGGGTTCACTGAGGATG
TTTCCTTGTTGAGATTCAAAGTAATCACGAGGGTCCTTGATAGAGAGTGGTGCTAATGGGAAGT
TTTGTGGTGCTTGAAGATCCTCCATTTCTGTTGCACGGGACATTCTCTCCAACCTCTCCTGATT
AGCGTCCTTGGTGATTTCACCATCAGCTTTGCTTACTTGTTTCGCCCGTGTGAGAGCCTCTGCA
ACAATTCTCGTATCTTCAGACTGAACATTGATGCATCTTCCTTCCAATACAACAGCAGCATGAC
GATTAAGATCTTGTAAAAGTGACCTCTTAAGCTGGTCATTCTGTGGTTCAATAATGTCATTGGT
GCCATCGCGCTGGATCCCGTGGTC

Genomic sequence CTGTTGCATTGGACGAACTAGTAAGGAAACTTGATGCCGGAGATCAGACTGCACCGACTGTTTC
ATTGCCTGGTTTACATTCGGTATAATATTACGGAAACCATAAACACTAGACCATATGCTGTAAG
TTTCGACTACAACTCTGCACCTATTCATTTTACCCAAATTTCATGTTTGTGTAAATGCATTCGT
ATGAAGATATAATGAACTACTTTTCTAACGCATTACTCCGAGAAAAAGATTTGAAGAAGAATTC
CATAGCTTACATCGAGTAGTGAATAAGTATTGGACATTGCATCCTTCAGTTTACCAACCTGCAT
GATAAAATATAACATCCTAGTATAAGAATTTCCTCTCAGTGTAAATAAATTTCAATTTGATCCT
GAAGAATCTATGTACATAGCAAACTCTATGATTGGAAGAATGTGAAGTGGCAACAACATTACCT
TGGTACTAAGATATGTCGTTGTTATTGGGTAAGATGACCAAAAATGTCTCACTAATTCTTGTAT
TGATGTCCAGTGCTGTATATGAGAGAAAAAAGGAAAAAGTATTGATGCATTTGAGGGGACAACA
ATATCCATAGGCATTATTAACCAAATTACAGTAATCAGTATATATTGAGCTGCTTGTTACTTGG
GACATTGGAGGATGTCAGACTTACATGTATAACTTCATCCTTAGTGGACTTTGGTAATCTGTCC
AGAAAGCTCTCTTGCGGGTTCTTCCCGAGAATATTTTTGGCAGTTGAGATAGTTCGGGTCAACG
AACTGAAAACCTGGATAGGGTTTAGCAATATTTAGCTCAGGGAACAAAGCAATAAGCCATGGTT
TCTTTAGGCAGCATGCATTTTATATTGAGATAGAATAGCACCTCAAAGGAAACTTCAGGTTTAA
TCAACGGATCACTTAATCCCGTCATTCTAATCACCAAAATGGATTCTTTTAGTAATCCATAAGC
TTCATGGACATTTCTTTTTGACGCCTTTGCTCCTCTGGGTTCACTGAGGATGTTTCCTTGTTGA
GATTCAAAGTAATCACGAGGGTCCTGATTCCAAACAAGAGAAGGTACGAGGATTTACGCACCAT
CTTTCATCATCAACAGTGTAAACCTATTTATCACAAAAAGCCAAGACCTTGATAGAGAGTGGTG
CTAATGGGAAGTTTTGTGGTGCTTGAAGATCCTCCATTTCTGTTGCACGGGACATTCTCTCCAA
CCTCTCCTGATTAGCGTCCTTGGTGATTTCACCATCAGCTTTGCTTACTACCAGGGGTAATAGA
CATGGATACCTAGGTCAGATGAATATGAATTGCAGCATTGGCCATTGATCAGCATAGAAAAAGA
AAAAGATAAGTAGAGCATATCATAATGAAACAGCAAACCTTGTTTCGCCCGTGTGAGAGCCTCT
GCAACAATTCTCGTATCTTCAGACTGAACATCTACTTTCCAGTATAAAAGAATAAGTGAGTATC
ATTGTATACTTTACCACCAAGAACTAAAAGCAGAGGGCCAAAATACATGTTTATCCCTCATCAA
CTATCTGTTGGGAAGTCATTTGATGGCTATTTTTTATACTGTTACACAAAACACCAGATGAAAC
AATCAGAGTTGAAAGTGTTTACTGATGCATCTTCCTTCCAATACAACAGCAGCATGACGATTAA
GATCTTGTAAAAGTGACCTCTTAAGCTGGTCATTCTGTGGTTCAATAATGTCATTGGTGCCATC
GCGCTGGATCCCGTGGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.207332734
Functional Information
Coding potential Y
Potential coding position 22728678-22727473(-)
Potential amino acid sequence MSRATEMEDLQAPQNFPLAPLSIKDPRDYFESQQGNILSEPRGAKASKRNVHEAYGLLKESILV
IRMTGLSDPLIKPEVSFEVFSSLTRTISTAKNILGKNPQESFLDRLPKSTKDEVIHHWTSIQEL
VRHFWSSYPITTTYLSTKVGKLKDAMSNTYSLLDAMKQSVQSDLRHQVSLLVRPMQQDHGIQRD
GTNDIIEPQNDQLKRSLLQDLNRHAAVVLEGRCINVQSEDTRIVAEALTRAKQVSKADGEITKD
ANQERLERMSRATEMEDLQAPQNFPLAPLSIKDPRDYFESQQGNILSEPRGAKASKRNVHEAYG
LLKESILVIRMTGLSDPLIKPEVSFEVFSSLTRTISTAKNILGKNPQESFLDRLPKSTKDEVIH
HWTSIQELVRHFWSSYPITTTYLSTKVGKLKDAMSNTYSLLDAMKQSVQSDLRHQVSLLVRPMQ
QDHGIQRDGTNDIIEPQNDQLKRSLLQDLNRHAAVVLEGRCINVQSEDTRIVAEALTRAKQVSK
ADGEITKDANQERLERMSRATEMEDLQAPQNFPLAPLSIKDPRDYFESQQGNILSEPRGAKASK
RNVHEAYGLLKESILVIRMTGLSDPLIKPEVSFEVFSSLTRTISTAKNILGKNPQESFLDRLPK
STKDEVIHHWTSIQELVRHFWSSYPITTTYLSTKVGKLKDAMSNTYSLLDAMKQSVQSDLRHQV
SLLVRPMQQDHGIQRDGTNDIIEPQNDQLKRSLLQDLNRHAAVVLEGRCINVQSEDTRIVAEAL
TRAKQVSKADGEITKDANQERLERMSRATEMEDLQAPQNFPLAPLSIKDPRDYFESQQGNILSE
PRGAKASKRNVHEAYGLLKESILVIRMTGLSDPLIKPEVSFEVFSSLTRTISTAKNILGKNPQE
SFLDRLPKSTKDEVIHHWTSIQELVRHFWSSYPITTTYLSTKVGKLKDAMSNTYSLLDAMKQSV
QSDLRHQVSLLVRPMQQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress; regulation of development and senescence of leaves