Detail information of AT1G73200_circ_g.2


General Information
CircRNA Name AT1G73200_circ_g.2
ID in PlantcircBase ath_circ_009929
Alias At_ciR2412
Organism Arabidpsis thaliana
Position chr1: 27524122-27526149  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G73200
Parent gene annotation Putative uncharacterized protein T18K17.13
Parent gene strand -
Alternative splicing AT1G73200_circ_g.1 AT1G73200_circ_g.3
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G73200.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCAAGAGATCTACTCTCTTCTTCTTTTGCTCTTTTGGTAATTTCTCCTTCATCCAATCTTT
TACATTTTCATCTAATTCCAATATCCAGATCACTCCcttgaaccggttgaccaagaacatagca
acatggctgtttgtgattttgtgttcaccaacagaagagacaaggttgaattcaatatcaggca
tgcttgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGAACCGGTTGACCAAGAACATAGCAACATGGCTGTTTGTGATTTTGTGTTCACCAACAGAA
GAGACAAGGTTGAATTCAATATCAGGCATGCTTGTGAAGCCAAACCACAGTTGATCAGATGGAG
GCGGCTTCATGTGTACACACAGTGTCCCTCGAAGCGAAGACACCCCTATAGACAAAGTAATTGG
GACCTGCAGTTTTACAAAACGAGATAGTCTAAGATACTACAAGAGCTAAGAAAAAGGTGTTTCT
AATTCTGCTTGCAGATCCTATTAATCATGCCACAATCCGAGCTTGTGAAGCTTGGGCAGTGAGG
GAACTAAGAGTGCAACAAGCAACGAAACTGTCTTCTAAACATAACAGAAAAACGAAGATCAACC
TGGGAAACTTGTTCAACGATGTTCTTCAGCATAGACTTCCACTTGGATCCATTGCTCGAACCTG
TTTTTGTACCTTTTGGACCCTTCGATTCATCTGCACAGATGAAAATAAATATAATTTCTCATCC
TTAGTCTAATGCTTCTAAGCATTATGCAAAACCACAAGAAAATGGATTAGATGATTACATAAAA
CCAATCAGCAAATACCGTACTAACCAGCTTTATCAGTTCCACCACTTTTCACATCTTGTGCATC
AACAGTTCCTCCGGGAACATTTAATTGCTTTTCAAAATCTGCAAGACCTTCAAGGAGATCTGGT
GGAACATCCCCAGCAGAATTTGGCTGCAACTTTCCCTCAGCTATGCCTTTCTGCAAATCTTCCT
CTCGAGCATCAACCCGAGTTTCAACTTCAAGTCCCGCACCACCAGTGTATTCAATATCTATTTC
GAACGCCCACACACCATTCATCTCCATTGGAAGAATTCTCGTACCGTGTATGTAAGGCGGGAGA
TTTCCAATGTCTACGTCACAGCAGATTAATTCGCCTATGTAGCTGGGAATTCTCATGTTGGACA
TTATCCGCTGTTTAAACACAACAATAGTTAGATAATAAATGAACGCAACCAATATCCTCATTCA
GTGAAAGCTTTCATATTCATGGAACAGACCTGGATTCGTTCGCGCACTAAATTCTTCAGTACTG
TGTTCTGTTTAACATCAAAAAACAGCCGAGATAATACTACGTTCAATGCCAATGTTCCTTCATC
AAAAGACTTGTCTTCTGAATCTACATCTGATGCATGACTGCTATGGCTCCAAGAACGTGAGATA
ACTTGGACATCAGTTTCCTCCGGGATGTTATCTTGCATCCTCCTTGCTGAGGTACTCTTTCCAG
AGCTACCAGTAGATTGTGAATCTTGGTAAGAACGGGATGAAGTCTTCTTGTCGTCACGAATCGA
CGGGGGAAAATTCACTTTAGTTGAGCACTTTTTCGAAAATTTCTTCCAGATCAAACGAACCTTT
GATGAAGGACCATCTGCTTTAAGCCCCTTGTCCAATGACTCAAAACTAAACCCAGCTGATGGTT
TCATAAAAGAAGGATAGGCAGCATTAAGGGAAGCCAGATAGTTCCGGAAATCTTCTTTCAATTT
GGTGGACCAAATAAACCTTTCCTGATTCTCGCAAGCAGCAAGACGAAGAGCTTTACACCATGAC
TCCTTCTCCCAAGAAGTCTCTAAGAAAATGTAAAACACTCTGTTTCCTTTATACAAGACAGAAG
TTTTGCTTTCTACTTGTATAGGAAATCTTTTAGCCCTAAGATAACATAAAACAAAGGAGTATGA
ATACGAAACTCGAAACATTATCGAAAATGGATCCGATTAATACGCTTTTTGAGAGTCTTACCAT
TTCCTTGTTGGTCCAGAGCCTGAAACAGCGTCAACAAAGCAACCTTTCAAAGTAATAGGAGTCT
GAGGGCCATCTAATGAATCAGACAAGATGAGCTTATGATCTTTGATGCGAGCAAATCTCCTAAC
TGGATGTACCTCCAAGAGATCTACTCTCTTCTTCTTTTGCTCTTTTGGTAATTTCTCCTTCATC
CAATCTTTTACATTTTCATCTAATTCCAATATCCAGATCACTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.135286001
Functional Information
Coding potential Y
Potential coding position 27526105-27524124(-)
Potential amino acid sequence MKEKLPKEQKKKRVDLLEVHPVRRFARIKDHKLILSDSLDGPQTPITLKGCFVDAVSGSGPTRK
WAKRFPIQVESKTSVLYKGNRVFYIFLETSWEKESWCKALRLAACENQERFIWSTKLKEDFRNY
LASLNAAYPSFMKPSAGFSFESLDKGLKADGPSSKVRLIWKKFSKKCSTKVNFPPSIRDDKKTS
SRSYQDSQSTGSSGKSTSARRMQDNIPEETDVQVISRSWSHSSHASDVDSEDKSFDEGTLALNV
VLSRLFFDVKQNTVLKNLVRERIQRIMSNMRIPSYIGELICCDVDIGNLPPYIHGTRILPMEMN
GVWAFEIDIEYTGGAGLEVETRVDAREEDLQKGIAEGKLQPNSAGDVPPDLLEGLADFEKQLNV
PGGTVDAQDVKSGGTDKADESKGPKGTKTGSSNGSKWKSMLKNIVEQVSQVPITLSIGVSSLRG
TLCVHMKPPPSDQLWFGFTSMPDIEFNLVSSVGEHKITNSHVAMFLVNRFKGVIWILELDENVK
DWMKEKLPKEQKKKRVDLLEVHPVRRFARIKDHKLILSDSLDGPQTPITLKGCFVDAVSGSGPT
RKWAKRFPIQVESKTSVLYKGNRVFYIFLETSWEKESWCKALRLAACENQERFIWSTKLKEDFR
NYLASLNAAYPSFMKPSAGFSFESLDKGLKADGPSSKVRLIWKKFSKKCSTKVNFPPSIRDDKK
TSSRSYQDSQSTGSSGKSTSARRMQDNIPEETDVQVISRSWSHSSHASDVDSEDKSFDEGTLAL
NVVLSRLFFDVKQNTVLKNLVRERIQRIMSNMRIPSYIGELICCDVDIGNLPPYIHGTRILPME
MNGVWAFEIDIEYTGGAGLEVETRVDAREEDLQKGIAEGKLQPNSAGDVPPDLLEGLADFEKQL
NVPGGTVDAQDVKSGGTDKADESKGPKGTKTGSSNGSKWKSMLKNIVEQVSQVPITLSIGVSSL
RGTLCVHMKPPPSDQLWFGFTSMPDIEFNLVSSVGEHKITNSHVAMFLVNRFKGVIWILELDEN
VKDWMKEKLPKEQKKKRVDLLEVHPVRRFARIKDHKLILSDSLDGPQTPITLKGCFVDAVSGSG
PTRKWAKRFPIQVESKTSVLYKGNRVFYIFLETSWEKESWCKALRLAACENQERFIWSTKLKED
FRNYLASLNAAYPSFMKPSAGFSFESLDKGLKADGPSSKVRLIWKKFSKKCSTKVNFPPSIRDD
KKTSSRSYQDSQSTGSSGKSTSARRMQDNIPEETDVQVISRSWSHSSHASDVDSEDKSFDEGTL
ALNVVLSRLFFDVKQNTVLKNLVRERIQRIMSNMRIPSYIGELICCDVDIGNLPPYIHGTRILP
MEMNGVWAFEIDIEYTGGAGLEVETRVDAREEDLQKGIAEGKLQPNSAGDVPPDLLEGLADFEK
QLNVPGGTVDAQDVKSGGTDKADESKGPKGTKTGSSNGSKWKSMLKNIVEQVSQVPITLSIGVS
SLRGTLCVHMKPPPSDQLWFGFTSMPDIEFNLVSSVGEHKITNSHVAMFLVNRFKGVIWILELD
ENVKDWMKEKLPKEQKKKRVDLLEVHPVRRFARIKDHKLILSDSLDGPQTPITLKGCFVDAVSG
SGPTRKWAKRFPIQVESKTSVLYKGNRVFYIFLETSWEKESWCKALRLAACENQERFIWSTKLK
EDFRNYLASLNAAYPSFMKPSAGFSFESLDKGLKADGPSSKVRLIWKKFSKKCSTKVNFPPSIR
DDKKTSSRSYQDSQSTGSSGKSTSARRMQDNIPEETDVQVISRSWSHSSHASDVDSEDKSFDEG
TLALNVVLSRLFFDVKQNTVLKNLVRERIQRIMSNMRIPSYIGELICCDVDIGNLPPYIHGTRI
LPMEMNGVWAFEIDIEYTGGAGLEVETRVDAREEDLQKGIAEGKLQPNSAGDVPPDLLEGLADF
EKQLNVPGGTVDAQDVKSGGTDKADESKGPKGTKTGSSNGSKWKSMLKNIVEQVSQVPITLSIG
VSSLRGTLCVHMKPPPSDQLWFGFTSMPDIEFNLVSSVGEHKITNSHVAMFLVNRFK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015