Detail information of AT3G09830_circ_g.1


General Information
CircRNA Name AT3G09830_circ_g.1
ID in PlantcircBase ath_circ_020722
Alias Ath_circ_FC5664
Organism Arabidpsis thaliana
Position chr3: 3017663-3017924  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ
Parent gene AT3G09830
Parent gene annotation Protein kinase superfamily protein
Parent gene strand +
Alternative splicing AT3G09830_circ_g.2
Support reads 2
Tissues whole_plant
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered AT3G09830.2:1
AT3G09830.1:1
AT3G09830.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCTCGGTCACTCACAGTTCTTACTTGGGACCTCAGACTGAGAATCGCCCAAGATGCAGCTCGC
GGATTAACATACCTGCATGAAGAAATGGAGTTTCAGggggcataaggaatgggttacggaagtg
aacttcctcggaatagttgagcatacaaacttggtgaaattgcttggctattgtgcagaagatg
atgaacgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGGCATAAGGAATGGGTTACGGAAGTGAACTTCCTCGGAATAGTTGAGCATACAAACTTGGTG
AAATTGCTTGGCTATTGTGCAGAAGATGATGAACGTGGAATCCAACGGCTTTTGGTTTATGAAT
ACATGCCTAACCGAAGTGTTGAATTCCACTTATCCCCTCGGTCACTCACAGTTCTTACTTGGGA
CCTCAGACTGAGAATCGCCCAAGATGCAGCTCGCGGATTAACATACCTGCATGAAGAAATGGAG
TTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.248470607
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a