Plant Circular RNA Database

Detail information of AT1G61150_circ_g.5

			
						 General Information
					
						CircRNA Name
						AT1G61150_circ_g.5
					
						ID in PlantcircBase
						ath_circ_008266
					
						Alias
						At_ciR901
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 22543368-22543993  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ, CIRI-full
					
						Parent gene
						
							AT1G61150						
					
						Parent gene annotation
						
							Protein GID8 homolog
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT1G61150_circ_g.2 AT1G61150_circ_g.3 AT1G61150_circ_g.4 AT1G61150_circ_g.6 AT1G61150_circ_g.7 						
					
						Support reads
						7
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G61150.2:3
AT1G61150.7:3
AT1G61150.10:3
AT1G61150.8:3
AT1G61150.3:3
AT1G61150.5:3
AT1G61150.9:3
AT1G61150.6:3
AT1G61150.11:3
AT1G61150.4:3
AT1G61150.1:3

General Information
CircRNA Name	AT1G61150_circ_g.5
ID in PlantcircBase	ath_circ_008266
Alias	At_ciR901
Organism	Arabidpsis thaliana
Position	chr1: 22543368-22543993 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ, CIRI-full
Parent gene	AT1G61150
Parent gene annotation	Protein GID8 homolog
Parent gene strand	+
Alternative splicing	AT1G61150_circ_g.2 AT1G61150_circ_g.3 AT1G61150_circ_g.4 AT1G61150_circ_g.6 AT1G61150_circ_g.7
Support reads	7
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G61150.2:3 AT1G61150.7:3 AT1G61150.10:3 AT1G61150.8:3 AT1G61150.3:3 AT1G61150.5:3 AT1G61150.9:3 AT1G61150.6:3 AT1G61150.11:3 AT1G61150.4:3 AT1G61150.1:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TCTACCTGCCCGGTTAAAGAGCTTCTTGATCTTTCCCACCGTCTTAAGACAGCAAGTGAAGTAA
ATGCAGCGATTCTTACAAGCCAGAGCCACGAAAAAGcagagatagatcttgcgaccattactga
tcgaatggctgttaaaaaggctgttcaaaacggaaatgtcgaggatgcgattgaaaaagttaat
gatttgaa

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 396
Transcript exons: 22543368-22543993
CAGAGATAGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTTCAAAACGGAAA
TGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGATACTAGACACGAATCCGGAG
CTCTTTTTTCATCTTCAGCAGCAAAGGTTGATAGAATTAATTCGACAAGGGAAGACAGAAGAGG
CCTTAGAGTTTGCTCAGGAGGAACTTGCACCACGTGGCGAAGAAAACCAAGCGTTTCTGGAAGA
ATTGGAAAAAACTGTAGCCCTACTTGTTTTTGACGATGCCTCTACCTGCCCGGTTAAAGAGCTT
CTTGATCTTTCCCACCGTCTTAAGACAGCAAGTGAAGTAAATGCAGCGATTCTTACAAGCCAGA
GCCACGAAAAAG
						
						Genomic sequence
						
							CAGAGATAGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTTCAAAACGGAAA
TGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGGTACAATGCTTCTTCATATCT
TGTGTGGAGAGTAGTCATTCACTTTTCTGATGTAATAAAGAAGCAAAATCTGATTCTTCTTTGA
ACCCATGCTTGCAGATACTAGACACGAATCCGGAGCTCTTTTTTCATCTTCAGCAGCAAAGGTT
GATAGAATTAATTCGACAAGGGAAGACAGAAGAGGCCTTAGAGTTTGCTCAGGAGGAACTTGCA
CCACGTGGCGAAGAAAACGTAAGTCTTTGTATTTCACTTTGATTTCTGTCGTTAAAGATGGTGT
TTTCCATGTGTATTGCTCATTGACTGTGTGTAATATCTGTTGTTGCTGAAACTTCATTCATACA
GTCTGTTATATCTCTCTGCAGCAAGCGTTTCTGGAAGAATTGGAAAAAACTGTAGCCCTACTTG
TTTTTGACGATGCCTCTACCTGCCCGGTTAAAGAGCTTCTTGATCTTTCCCACCGTCTTAAGAC
AGCAAGTGAAGTAAATGCAGCGATTCTTACAAGCCAGAGCCACGAAAAAG

Sequences
Splice junction sequence	TCTACCTGCCCGGTTAAAGAGCTTCTTGATCTTTCCCACCGTCTTAAGACAGCAAGTGAAGTAA ATGCAGCGATTCTTACAAGCCAGAGCCACGAAAAAGcagagatagatcttgcgaccattactga tcgaatggctgttaaaaaggctgttcaaaacggaaatgtcgaggatgcgattgaaaaagttaat gatttgaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 396 Transcript exons: 22543368-22543993 CAGAGATAGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTTCAAAACGGAAA TGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGATACTAGACACGAATCCGGAG CTCTTTTTTCATCTTCAGCAGCAAAGGTTGATAGAATTAATTCGACAAGGGAAGACAGAAGAGG CCTTAGAGTTTGCTCAGGAGGAACTTGCACCACGTGGCGAAGAAAACCAAGCGTTTCTGGAAGA ATTGGAAAAAACTGTAGCCCTACTTGTTTTTGACGATGCCTCTACCTGCCCGGTTAAAGAGCTT CTTGATCTTTCCCACCGTCTTAAGACAGCAAGTGAAGTAAATGCAGCGATTCTTACAAGCCAGA GCCACGAAAAAG
Genomic sequence	CAGAGATAGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTTCAAAACGGAAA TGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGGTACAATGCTTCTTCATATCT TGTGTGGAGAGTAGTCATTCACTTTTCTGATGTAATAAAGAAGCAAAATCTGATTCTTCTTTGA ACCCATGCTTGCAGATACTAGACACGAATCCGGAGCTCTTTTTTCATCTTCAGCAGCAAAGGTT GATAGAATTAATTCGACAAGGGAAGACAGAAGAGGCCTTAGAGTTTGCTCAGGAGGAACTTGCA CCACGTGGCGAAGAAAACGTAAGTCTTTGTATTTCACTTTGATTTCTGTCGTTAAAGATGGTGT TTTCCATGTGTATTGCTCATTGACTGTGTGTAATATCTGTTGTTGCTGAAACTTCATTCATACA GTCTGTTATATCTCTCTGCAGCAAGCGTTTCTGGAAGAATTGGAAAAAACTGTAGCCCTACTTG TTTTTGACGATGCCTCTACCTGCCCGGTTAAAGAGCTTCTTGATCTTTCCCACCGTCTTAAGAC AGCAAGTGAAGTAAATGCAGCGATTCTTACAAGCCAGAGCCACGAAAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.214109822

Conservation Information
Conserved circRNAs	NA
PMCS	0.214109822

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							22543400-22543990(+)
						
						Potential amino acid sequence
						
							MAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQEELAP
RGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTSQSHEKAEIDLAT
ITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQE
ELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTSQSHEKAEI
DLATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALE
FAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTSQSHE
KAEIDLATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTE
EALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTS
QSHEK(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	22543400-22543990(+)
Potential amino acid sequence	MAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQEELAP RGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTSQSHEKAEIDLAT ITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQE ELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTSQSHEKAEI DLATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALE FAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTSQSHE KAEIDLATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTE EALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTS QSHEK(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of AT1G61150_circ_g.5

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