Detail information of BGIOSGA002495_circ_g.3


General Information
CircRNA Name BGIOSGA002495_circ_g.3
ID in PlantcircBase osi_circ_009337
Alias Chr01:1171611_1172567(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1437320-1438276  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA002495
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA002495_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TG
Number of exons covered BGIOSGA002495-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATTTGCTTACCAGTCTTCTGTAGTTTTTTCTCCATCTCTTGGCGCTCCTTAAACTGCTCATT
CATAGCCAATTCCATCACAGCCTCCTTAGTAACTTCccttcacgttttctagcttcctcttcct
cacggagcctttggaggcgctgctcttctaagttaagatagtacattaacttccgcactgtatc
cctttcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCACGTTTTCTAGCTTCCTCTTCCTCACGGAGCCTTTGGAGGCGCTGCTCTTCTAAGTTAA
GATAGTACATTAACTTCCGCACTGTATCCCTTTCACGCTTCCTTGATGATATCAATTGACTAGT
CCTTTCATCCCTCTCTTTCTTAAGACGACTAAACTCAGCTTCACGACGTTGGACAATTCTTTCC
TGGAAAATGTTCTGCAAGCAAAAAGGGCAATTTAAAATATGTGCGAAGGAGAGAAGACAGCTGT
CTATTCCCTGACAGGAACAAATCGCCTGGTGTATTCAAATGTGTAGTGCTCAAATCATGTGAAC
ACACACATAGCCAAAGAAGACATGCCAATATTAGATTCTCAGCAAGTATAGCACATATTATATG
TTAAATTAATCTGTATCTAATCAGACCTTTGCACAGAAAATATACTAAGTATTTCAACTGTTAT
GCTTGGAATTGCAAAACATGGTTTCAGAAAAACACAGGATTAATTACAGTGGGACATTTGGTCC
TTCACTTAACTAAAAAGAAGATGAAATAGTGCAAGAATATCTGGTCTGAATACAGATATGTATT
TGCTTACCTTATGCTCCAACATTCGAGAAAGTCTGTTCTTCTCCTGCAGGTCACCTGCATGGTG
TTGCTTGCTGAGCTCAATCTCTCTCTACAAGAAGAGATTAATAGTGATTTTTGTGAGCTTAAGT
AAACATACGCTATTGTAATGTAACAATCAAGGAATTGTGAGAAACAAACCAGCTGCTCTTGCTC
ATGAAGGATTTTCTCTACTTCAAGGCGTTTTTGAAAAGCTTGCTCAATTAGAGGTGCCTCTTCC
TGCCTTTTTGCCCTCTCCAAGTAATCCATTTGCTTACCAGTCTTCTGTAGTTTTTTCTCCATCT
CTTGGCGCTCCTTAAACTGCTCATTCATAGCCAATTCCATCACAGCCTCCTTAGTAACTTC
Conservation Information
Conserved circRNAs osa_circ_000162
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021