Detail information of Zm00001d043376_circ_g.3


General Information
CircRNA Name Zm00001d043376_circ_g.3
ID in PlantcircBase zma_circ_001490
Alias circ661
Organism Zea mays
Position chr3: 198081650-198085747  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRI
Parent gene Zm00001d043376
Parent gene annotation Long-chain-fatty-acid-CoA ligase-like protein
Parent gene strand -
Alternative splicing Zm00001d043376_circ_g.1 Zm00001d043376_circ_g.2 Zm00001d043376_circ_g.4 Zm00001d043376_circ_g.5 Zm00001d043376_circ_g.6
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d043376_T005:6
Zm00001d043376_T004:6
Zm00001d043376_T001:6
Zm00001d043376_T002:6
Zm00001d043376_T003:6
Zm00001d043376_T006:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACTGTAATGGCCTCTGTACTTTTACTCGCATCGTTGGGATATGATTCTCGCCATCTCTGCCA
TATCCCGCTTACACTGAATTTTGGTATAAACTCAACcgtcccaaaattatgaagtatccttcct
catctacagttactgtatcacctgtcttgaagaatcctccatcaatgaaagattctgcggtgac
ctgcaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTCCCAAAATTATGAAGTATCCTTCCTCATCTACAGTTACTGTATCACCTGTCTTGAAGAATC
CTCCATCAATGAAAGATTCTGCGGTGACCTGCAAACAGAAATTCACTGTTTTCAATGATGAAAT
AATGTATCTTAACTTCTCAGCATGTGTCCTTCACTGGTTTCTATATGGCTGAAATATCTAGTAA
ATTTCAAAATTTGTCATTTGAGCAGTACAGTGTAAACCCCAAAAGTTGATTTAGAGGTCTAGGT
AGTTTTATTATTTTACTTATTCAGAAAAGAGAGTAAATAGGGAATTTATTTTAGTGTGTAAATT
TTTCATTTGAGATATGTTCCTTTAAATAAATACTAAATAAATAAATATATTTATGCATCATTGT
GGAATATTTGTTTGTGCATCTACATTTGAATTTCTAACAAGCTCCAATTTGAGTTTGAAAATGA
AACTGAAATTAGAAAATTAAATAGAAAAGAAAGGGAGAAACCGGCTTCCTAGTCCGAAACCCCT
GCCCCAGCCCACTTCTGCCCGCACCGCCCGACCCGCCAGTACGCCACTCGCGCCCGCCGCCACT
GTTGCTAGCAAGTGGGAGTGTGGGACCCGTCACCATGAGTCACCCGTCCGTGCGATCACTTGTG
TCTGCGCCAACTGGTGGGGCCCCTACGCCAACCTCTTCACTCTCACGTTACTGTTCTTCTCTTC
TGTAACAAATTTCAACACAATCCGTAACAAACGCGAGCTGTCGTAACCACCATCGGCGAGGCTG
TTGGGAATCGTCCGAGCTCCCTGGGAATTGGACTCTGCCCGCCGGGGTATAAAACCCGAGCGGA
CGCACCTCCCCTTAGGCCGTCAACGCAGCGCCATCGTGTGTCTACGCCAGAGAACCATAATCGT
CGTAGACAGAGAGTGGGGAGAGAGACAGAGATCACCGCCACTTCCGATTCAGACGATTCCCAGA
TTTCGTTCTTCATTGTCAGATCGTCGTGCGCCGCGGTTAGAGCTGTCGGCGTCCTAGTCCTTGG
TATGGATGTTCCCATCTAGTTCGCTTTGTTCTCCGCATTGAGTAGCACCTCTTCGCGTTTAGTT
CAGCTCACTGGAAAGCCTGGGCGCCTAACACCGGCAATGGCGCTGCCGCGGAGGGCCTTGCCCC
GTCATGGTGAGGGAGATAAGGGGGGATCCAGTACCGTAGATCTGTTCTGTTCATGGTGGATAGG
ATTAGATTATGCGATACCGTTTCGGTGCATTGAAACAGGACCGTAGATTTTTGGATTGGTGACT
CGGATTAGATCTAACGGTACCGGTTCGAGAGACCAAGTGCAAGTCGTTGATCCATGGCCAGACG
ATCGATGCTCGTGCGGGATTAGTCAGTCGAGGCAATCTTTCTCAAGAGACCCTAAGATTTCAAA
TAAACAATCTGCCATCCATTCATATGTATAAATCCTTACAAAGTGGTCCTAACATTTATAATTA
TAACCCTGAGTTTTCAATAAATACAACCCACCATCCGTTAGGGTCCGAATTACACTAAAGTCCC
TTTGTTTATAATGTTAATTACAAAAAGGTCCCTAATTACCACAGATAAGCCTTGGAATTTATAT
TTTTATTTAAAAACAGTTTTAAAACTTAGATAACTCATATCTTTCATGTTTTAACTCCGATCTT
AATGGTTCTCAAACCTATGGAATCGTATCAACGCGTAAACTTATATTACGCAGTTGATTTCTTT
GTTTGATGTAATGTTAGTTTTATTTATTGTTTGCATATGTGTATGTTTTGTTACGAATAGAAAA
GCGAGGTTGCGAGAAACATGAAGCCTAACTTAAGGAAAGCATCTGAGCAGTTGGAGTTACACCA
AACCGTGATTACAATCTCGGTCAGGATTCGATGGGATTCGTTGTTTTGTCCCGTTCCTGGTGAA
CGCCGGCAACAAAATCTAATGACTTTTTTAGATTTTTCGTTTGAAATTAAAAAGACATGAAAAA
TCTAGGAAACTTCTATAAAAAACTAGATGTTCTCAGAAGTTCTAAAATATATTTGTTGTCCAAA
AATCCATCTTTTCGTGCAAAATAAAATTCGTTGTGGACTTATATTTTATCGTTGCTATTCCAAA
CTAGTTGATAGTTATTAGTTGGTAATTTTAAAAATATTAGGTACATGTTGTGGACTTATTTCAT
ACTTTTCTAGTTTTTTAGTGAGTTATTATACTGATATGCCTTGACAACAATATTTAGTGAAGAT
TTGTTATATTTCGGTTTAGGGGATAGCTGTTAGTTGATAGTTGTTGTTTAAATGTAGTTGTTCC
TTGTGGTATAACATGTTAGTATTAGTTTCACACTTATTTGTATTGTTGTAGGTAAAATGCCAGA
CCTAGTGTGGGAGCATGGAGAGAAGGTTGGTCAAGGTTTTAGGTGCAAGTATTGTCGTAAAGGG
AAGAGTAGTGGCGGTGCTACTCGTTTCAAGGAGCATTTAGCACATCGAGGGAAGGATGATAGAA
TTACCCATCTGTGTCTCTTGAAATAAAGAAATTCTTTGCTGGTTAGCTAGACAAGACAAAGGAA
AAGAAGAGACAGAGGATTCGGCAGAGGCAACGAGCAGATGAAGCAAGAACTCGTTATGATGCAA
TTTGTGTTATTGGGCAACCTGTGTTATGGAGAACTTTATATATACTTGTATGACACAACCGTAA
TCTTCTATTGATGTGTGTTGCACTCAAATTATGGTTTTCTATATGCATGTGTGTTTTGTGTTTT
TGTGCATCAAATTATTTGTGAATATATTGTTATTCATTGCGCAACATGGTTTGAATAGAATACA
GACAAATCCTACCAATTTTTTTAATTTTTTTCTAACCAAACTATGTTTCCCGTACTGGCACACA
TACAAGATGCCATCTAGATTTGTCCTTAAATTTGAGTGTGACATACAACTTAGCATAAATGTCA
ATGCCTGCAATCTTAAAAATCTAAAGCATTAAAAAACAATACATAACAATGCATTGAAATAAAA
ATGTATGCTTTACAGTTGTAGTTAGTAGGAATTAGAAACTTCCTAAATGAAATGGAATGTTCCC
TCCAAAACTATACCCCATGATCATCAATTGGCAAAAGTAGAAACAGCACGATCATACCTCTGGT
CTTTTCCAATACTCCTTGAAAAGAGATGGACTTCTAATGCAGAGCTCGCCAACTCCAGTTGTAG
TTTCAGCCCCGTCCTCCATAATGATCTTGGCCTGAGTCAGAAAGATGACTTAAAACTATGAAGC
AATGCAGAATACACAGAATAACCAATGCTTTAATGATACTAACTCCCATGAATTGTTCATCATA
CCTCAATGCGTGGAAGAGGTTTACCAACTGTACCTTCTTTTCGGATACCATGCAATGGATTAGA
CAGTGCCATGACAAACTGTAACCAATATTAAGTCTATCAGGAGTCATACAGTTAATTAGTGTAT
TGACTAGATGGGGAATATTTTTTACCTCAGTCATACCATAGCGTTCCAAAAGACGATGGCCTGT
CACTTCCTCCCACCTCTTCATAAGTGGGGAAGGAAGAGCTGATGATCCACACATCTGCAGCAAT
TCAATGAGTATTAATGATAAAATCTTTATAATTCATGCATCAGTTCCATGATAGAACTGAAAAA
GGTCTATAGAACTCACTAAGAATACAGATGTAAGAGTAAAACACAAACCAGCAAATCACACTTC
GATGCACAGCAAGTGAAAAAATGATAAATGATAAATGTATAAAGACTTAAACACTGTTTCCAAT
GAACATTACCATTAACCTCAGATGCTTTGCAGCGTAAGAAGAGGCCGACTTTTGATCAGGATCC
ATACTATCATACCCTTGCAGCAGACGTGTATACATGGTTGGAACCTGCCATAAAAGAAGTATCA
AATTACCTTAACTTATCAAACAATATGAAGAAAAATAGTTTGGCATGAATCTGAAGATACTGTT
ATGCTATGACAGCAAATCATACTCCAGTAAATACTGTAATGGCCTCTGTACTTTTACTCGCATC
GTTGGGATATGATTCTCGCCATCTCTGCCATATCCCGCTTACACTGAATTTTGGTATAAACTCA
AC
Conservation Information
Conserved circRNAs NA
PMCS 0.00412805
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b