Detail information of Os05g0537400_circ_g.1


General Information
CircRNA Name Os05g0537400_circ_g.1
ID in PlantcircBase osa_circ_042165
Alias NA
Organism Oryza sativa
Position chr5: 26707642-26707725  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0537400
Parent gene annotation Similar to Protein phosphatase 2C. (Os05t0537400-00)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os05t0537400-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCGCCGCCGCCACCGCCTCCTTCCTCTCCCCAAGATCCACCaccggcgcgcagtccatcaggt
agacgctcctcttccccgcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 84
Transcript exons: 26707642-26707725
ACCGGCGCGCAGTCCATCAGGTAGACGCTCCTCTTCCCCGCCCCCGCCGCCGCCACCGCCTCCT
TCCTCTCCCCAAGATCCACC

Genomic sequence ACCGGCGCGCAGTCCATCAGGTAGACGCTCCTCTTCCCCGCCCCCGCCGCCGCCACCGCCTCCT
TCCTCTCCCCAAGATCCACC
Conservation Information
Conserved circRNAs NA
PMCS 0.245273016
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study