Detail information of PGSC0003DMG400002086_circ_ig.3


General Information
CircRNA Name PGSC0003DMG400002086_circ_ig.3
ID in PlantcircBase stu_circ_000320
Alias chr02:36108526|36113227
Organism Solanum tuberosum
Position chr2: 36108527-36113229  JBrowse»
Reference genome 3.0.38
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing PGSC0003DMG400002086_circ_ig.1 PGSC0003DMG400002086_circ_ig.2
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   AT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGATTGCTTATATGCTGCCTGTGAACATGGAAACACTTGGTCAGAGGGTTCCTATTATGTTAC
TACAGAAAAAGACGGTGTCTACATTGGCCAACCTGTctgaagtggaatggctctttctgtaccc
tcaaggtatgaaaaaaattgtgatgtacatgaaggacagattcaacaatactccaatggttatc
accgaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAGTGGAATGGCTCTTTCTGTACCCTCAAGGTATGAAAAAAATTGTGATGTACATGAAGGA
CAGATTCAACAATACTCCAATGGTTATCACCGAAAATGGTAAGAAGAAAAGAAATTTCACATTC
TTTTCATTTAAAAGCGAGATATAGTTTAATTTATCAACTAATAACCTGAACAAGATGCATTTGG
ATCTGTTGGGATGCATCCACTGACACAACTGGCAATGTTGCAGGCATTGCTGAGAACGATAATC
TGAATCCTTCAATAACGGACACCTTGAATGATATTCATAGAGTGAACTATATGCATAGCTACTT
AAATTCATTGGCAAATGCAATCACGGATGGTGCAGATGTGAGGGGGTACTTTGTTTGGTCCCTT
CTCGACAACTTTGAGTGGCTAGATGGATATAAGCTAAGATTTGGACTTCACTATGTCAACTATA
CTAATCTTCAGAGAATACCAAAATTATCAGCTACCATGTATAAACAACTCATGTATAACTTCAA
CATACAGCTTGAAACAAATACTGCCCAGAACTAGTGGGAGAAGATGATGAAAATCGGAGGTTTG
TAAAGATTATTTTCATTGCAATGGAACTGTAATCATGTAAACAAGATCTATTAATTAAATAAAT
AGAAATATTCTGTTGAAAGTTGTGTTGGAAGAGGTTATGTCATACTTGAATGATAGTCTTTATC
GACTATAACTTGTTGGCGTAGAGACCCAAGCTAACTAGGATCTACAACAACTCGATTATTGGAA
TGTCCAAACTCGAGAATGAGGTTCAAGAGAGAGCAACCATTTCAATCTTGCGGATTATATTTTG
TACTTTGTTAAATGGTGCAGTTATAGAATTGACAGTTGGTAGATTTTCAGATGGGTATATTTCT
AATTTTTATTTATCGTAAATTAACAGATTTGTCGACATTAGTACAACCAACTACATTAGCTTGA
TATATCATGAAATAAACAATAACTATAAGACAAAAAACAAAATCATCCAAGATTCTTATATGAG
GAACCCACAAAATTAAGTTATCGAATATAAATATTTCAATAACACCATATTAAAGTAACAAGAA
AGCGTTGAAAAGTATAAGGGATCAATAATTCAATTATTTCCACTTCTTTTCATCTTTCACAGTT
GCAACACACAAAAGTTTTGAGTGCTGATTTTTTTGGTTGAATTCCGAATGAACCAAAAGAAGAC
AACTGCAACACATTAAAAAATGGCCCCTTTCTCAGCTTACAAAACCTTATTGTCCTATTTGATT
GATGACTCAAAGGTGACAAAGCATAAAATTATATTTAGTCACTAGCGTTGTAAAAATTCGAAGC
AAAAGGCTTCCAACAACACAAAGCTTGATAAACCATACACACCAACAATGATGAATTTTAGATT
TATAGTAAATGACCAAAATGAACACATTTTGTCATACATTAAAGACTATATCAATTAAGTGAAA
TATATTAAGGATCAAAATGAACATATTTGTTATAATCATTTTAATAAAGTGAAATACATTAAAG
ACCAAGATAAAGAATTACCCATATATTAACGACCATTTTGGTCATTTTTGTTGGGTATTATTTG
CCTCGATAGGTTTTCCTTTTTCTAAAAGGGAAAACATTAAGTCTTCATATTTGACTAGTCTTTT
TCTTGTAAGAAAAGATTTAAGATTAGCTAGTCCTTTTCTTGTAGAAAAAGGTTTAGGAATCTGA
GGTTTGTTCTTTCTAACTTAATCAACTTTCACAATGTAGTCCTTAGGAATTTTGAAAATTTTGG
TTAGGGTGAGAATTTGTGGAACACAATTGATAACAAGTGATATGTTATCACTTGTGTGAACCTC
CTTGTATTTCGATCGAACCACGTTAAATCTTTGTGTCTTTTGATTTCTCATTTGTTTTTTTACT
TGTAGTCTTTCGAGGTTTGCTTCGTTTGTCTTCTTACTTGTGGTCTCTTGAGGTTTGCTTTGCT
AGCTTCCGCATGACATTTAATTATTTCGGTCCTAACAATTTTCTCATGTTCTTTATGTCTTTTT
CCCAGGAGCTTAAAAAAGAAACATCAAGAACCACTTCTCTCTGAGTTTTCCACTTTCACTTAAC
AAATCAAAGCTGTATGCTTCCTGCAATGTTTTATCACATATCAATTTGCATGTTGTTTTGTGGT
TTCAATTTCATAGTATCATCATGTCATCAAATAGACAACCTTAATATTCTCAAAGAAAATGCTA
ACCAAGTTACATCTTCAAGCAATTTCTTGTTTGGAACAGCCTCTTCTTGTTACCAGGTACTTCC
TACACTTGTTTTCTTTTTTGGGGCTGGATTGTTGTTCTGAGTACAACTTTTTTCTTGTTTTCTC
CGCAGTTTGAAGGAGCATTTCTCAGTGATGGAAAAGGTCTCAACAATTGGGACGTTTTTACTCA
TGAAGCTGGTCAGCTTCTAAAATTAATGAATGTCAATTTCTTTTAGTCCATTTTTTTATTAATT
TTGGTTACTGTTGTTGCAGGTCATATCAAGGATGGAAGCAATGGAGATGTTGCTGTTGATCACT
ACAATCGTTATTTGGTAAACCTAGCTAATTGATCATTTGAGTTTGACTTCTTTCTATTTTCTTT
TATATATATGTAATTTCTGCAAAAAAAAAAGAGTATGTTTTTATCCTGCTGAGATGGGATCATC
TATAGTGAGGCACATTGAGATTATTTAGATGGTTACTGATAAATTTGTTTTTTTGGCCTACAGA
AAATCAACAATAAACTGAATATTTTAACACAATACTGATAAATTAGATAGGAAGTAGTTATGCT
TGAACTTTTTGAGATCAGAATTAACTTTTCCATGCAACATCATTCATGAAGAAAAGGGAAACAC
CCTAATTTGTGCTTGCAAGAGAGCATACATGTTTGACACAAAAGGGAAACAGTTAGATCTAAAA
CTCACATTGGTGTTAGCTTGTGTCAAAGCTGATCAACAAATAAGGAACTTGCAAAATGGCAAAA
CTGGGGAACACAAATTTGGTTTCTGCAACAAGTCATAAGCGTCTCAGAAGAGTTTATGAATGAA
TGTTAGATCAACATATATAGTGTATTAGCAAGAAAATAGACTCACTCGTAAAGCATGAATATGA
AGAATTCTGAATTTCTGATGTTTGGTAATAAAATGAAAACAGGAGGACGTCAAGCTCATGGAAG
ACATGGGTGTGAATAGCTATCGTTTCTCCATATCATGGGCAAGAATTCTTCCCAGTAAGTTATA
ACTGTCACTACTCTCTTCCCTTCATTTTCAGCAAATACTTCTTGTTGTCTTTTCGATAGATCAA
TCTTTTTCTTTCTCGGGTTTAAATTTGACTCAGAGGGGACATTTGGAGATGTTAACATGGCTGG
AATTGAGCACTATAATAAGCTTATTGATGCACTCCTACAGAAAGGTCGGTTCTGCTTCACTTGC
TAACAGTTTTAAGTTATCGATATATCCAAAATAAAGAAAATAAGAAAAAATTTGGGCTCAGACG
ACTTCTTTATGTTCTGTGAATTCAGGGATCCAACCGTTTATCACATTAACACATTATGACATAC
CACAAGAACTTGAGGAAAGATATGGTGGTTGGCTAAGTTCACGAATACAGTAAGTAGCTGGTCT
CATTTTACACTTTAAGGTAGTTGTAGATTCCATCAAATGCTGTGACGATGAACAAGTTAATTTG
TCTTGTGTTACAGGGATGATTTCAGCTATTATGCGGACATATGCTTCAAATATTTTGGGGACAG
AGTTAAATACTGGACAACTATCAATGAGCCTCATGTCATGGCTGTATATGGCTATAGACTAGGA
TCTTACCCTCCAGCTCGATGCTCCGGTATATTTGGGAACTGTAGTGCTGGTGATTCAGAAAGGG
AGCCCTTCATTGCAGCGCACAATATGATCCTATCTCATGCAGCTGCTGTCAGAATTTACCGTAC
CAAACATCAGGTTCGTTCAATGGCTCTAGACGGCATGATCTTGCAGAATTAGTCCAAATGGATT
ACCCCTTTAGTGCAACGCTACTTTCTGGCTTGTAAATGACATGAAGTGAATTTTGTTGTTAGTA
AAACAGGAAAATTGATACTTAGAAGACTAGAGCTCGAGAATTTATGCTTGGAAACTAATTCCTC
CTCTATCTATTAAATGGTATATTGTAAAAGTTCATTAAAAGACCATACAATTAGTATCAGTAAC
TATTTTATGCTGGTTTTCAGAAAAGACAAGGAGGCATGGTTGGAATTGCTTTGGATATCCAATG
GTATGAACCATTTAGCAATTCCTCAGAAGACATAGCTGCAACTGAGAGAGCTCGGTCATTCTAC
TTCAACTGGTAATCTTTCCTTATCAGTAGTTCAATGCTATAATCTGGTTTCTTGTGCATCAGAA
AGAGAGGGAAAAAATGTTATTTTTTTACTATGCAGGTTTTTAGACCCTATTATATTAGGAAGAT
ATCCCAAAGAAATGGTACAAATTCTGGGATCTAATCTGCCAAACTTTTCAAAGAATGATTTGAG
CAAGCTGAGTTATGGCTTAGATTTCATTGGCATCAATTACTATACGGCTAACTATATCAAAGAT
TGCTTATATGCTGCCTGTGAACATGGAAACACTTGGTCAGAGGGTTCCTATTATGTTACTACAG
AAAAAGACGGTGTCTACATTGGCCAACCTGT
Conservation Information
Conserved circRNAs NA
PMCS 0.117167134
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018