Detail information of Zm00001d044274_circ_g.6


General Information
CircRNA Name Zm00001d044274_circ_g.6
ID in PlantcircBase zma_circ_007882
Alias zma_circ_0001363
Organism Zea mays
Position chr3: 223587285-223590904  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d044274
Parent gene annotation DENN domain and WD repeat-containing protein SCD1
Parent gene strand -
Alternative splicing Zm00001d044274_circ_igg.1 Zm00001d044274_circ_g.1 Zm00001d044274_circ_g.2 Zm00001d044274_circ_g.3 Zm00001d044274_circ_g.4 Zm00001d044274_circ_g.5
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d044274_T001:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTACCTGTTAAAACTATAGGATAACTACGTGGATAAGTTGAGACATCATCTGTGTCCAGCCC
TGAAGAATATATTCTTACTCCCGCTGGCAAAACACAcattgacatggagtcgacaggctggtta
gttgctcgagaacgctttttaagaaaagcttgagaattgaaaccagtcgctgaagtagtatcct
gacaatgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTGACATGGAGTCGACAGGCTGGTTAGTTGCTCGAGAACGCTTTTTAAGAAAAGCTTGAGAA
TTGAAACCAGTCGCTGAAGTAGTATCCTGACAATGGGGGGAAAAGGTACTCCTAAGTCACGAAA
ATTATAAATAGCTGCTTCAGAAGTTACTAGACATGATGGCTTACAATGAAGTTACGATAACCAC
TCAGGATCTGTGCAAAGAATCTCAAAAATATCAGCCTGCATAAAAACAGAATATCAACTAATAA
AATATGCTCCTACTGAATGTAATGCTGAAACAATTTAACTTCTTTCACGGATCAAACGGCAGAG
TGGAAATAATACAAAAAACTAAACTCTAAGACTTAAAAATAATGATTCCCAGGAGAATGGATAA
ATATCGTGAAGCACTGGGAGTAACATCACAAAGGATTCTAAGGTCCCTGACTAAGGATGAAGAT
GAACATATTATGCTTTCCAGTTTCCAGTAGTTCCTGTGTTGCTTGTGACAAAATAGTTTATTCC
CACTGATTCTGGTACCATGTGACACAGAAAATGGTGAAAATAATCCAAATATCTAGTGCATGTG
CATATGATGGTGCAGTAATTAAATGTGCTAGCAACCCACATATCTTTATGCCTATCTAAGGCGG
TATTTAAGCAGAGCATGGAAAGCATAGGAAAAGAGAACAGAATTACCTAAGTTGGAAATCATGT
TCCTGACTCCATGATTTTGTGCCAGCCCTTAGGTCACCCATATTGGCAAGATTGATTTTCATGA
AATCAATTCCCATGACATTGGGTTGTAGTAATTTTAAAATCTCAACACGAAGAAAGTTATGTTC
AGTTTCTGGTATTGGAGGAATTTCTTCCGTTATTGTTATACGGTTGTATTCGAGATCTACCACC
ACTACCTGCAGTCATATACCTTATCATAACAATGGTGAAATGCATTAATTTGGTATAATCGAGA
ATGTGTCAAGTGTGTAGATTAATGCATGTATTTGTTGCCAAACCAAAAAGAAAAAGACAATTAC
ACCATGTTTAGAAAACAGCTAAATATAGGCAACAAAAGAAACTTTTAGTTTAAGCATGCACAAA
CATAACCAAAAAGAACTTCTCATAAGAGTACTTTGAATATGTACTTAACTAATTAAAGTTACTT
TGATTCGATACAAAATTATGCTTGATTAGAAGTAGTCATATTACCACAATGGAAATTATTAACA
CATCTGGAAGGAAACCTAGTGCCATCAAGCTCTAGATATTAGTATACTTACAAATTCTGCAAAA
AATCAAATATGTTCAAAGTCAAGCAAGCATTATCACTTTGGAAGTTTATTAACGTGTTGCACAC
ACCTCCTACTTTTATGTTGCAAATCAAATAGAATGAAGATGTCGCATTCAAACAGCTGTGAATA
TCAAGGCAACCAAAACTACCTTTTAATAAAAAAGATAGAAAAAATCCCTTTCATACCAACTAAA
TGAGAACTGATATACTGATATATCACTACAAGAGAAAAAGAGCAAGACCAAAAGTTTAGCAAAT
GGAAAACCTCGTCCTAATTTTACAACTTACACCATCCATTGTCACTGCAGATGTGTCAACACCA
GAATGAAGCCCCATCATGTAGGGTGTCGGGGCATCAATGTAATCAACCCCACTAGAGAATATTA
TTGGAATATAGACATGCTGCAGCAAACAGAATAAGCTATATGAAGTCACACCATGATTAGGAGC
ATATTATCAGCACGAATTATGGATACAGACATGAATGAATTCCTCAATCACAGCAATTGTTTTA
CAAGATGCTTTTCAAGTCCAGTGAAAGTTTATGAAATCGCATATTTGATTGAAACCTACCTGCC
ACCTAATTGGGTATATTAAATGGCAAATGGCTTCTGAAACTAGAGTCAGTAGAGTATACCTGCA
TTATCAATCAACGAGAAGACTATCAAACGCATAATAATTTCATCATTAATGGTGGCGAATGTGT
CAAGAACTCTTTCAGGTTGAGGTAACATATGCAATGAAACGGTTCCTTCACTTATGTGACTATG
ACATGCAGAGACAAGGGTGAACAGATAAGCAAGGGACTTTAGTCCCAAGTAAATTGGAGTAGGC
TAAATAAGGATGAACTGATAGGAGGAGCAAAATGATCAAAGTAGCTAAGTGGGAAGTGGGGACA
GAACAATCAAATACTTATTTGATCGAAGCAATATCCTTCTTTCAAGCAGGACAGCTGTAAAGAG
AAGTATTAGTTTATCAACATCCAGACACTGCACCAATGGCTGGAATGATATCTGCAGGCACAGA
AAAACTTAACCAGTCTGATGTGAATAAAATGAATGTATTCAGTTTAACATATGAATTATATTGG
AAACAAGGCTGAATAGCGTAAGAACAAATGGAAACAGGAAACATACATCAGCATGGGGAAGCCA
TTCTTTTGGAGGAGCTTCCGCAGAAAGAAGACAATTCTCAATGGCAAATAAGACACGATTCTTT
CCTGGTGTGGGTAATGTCACATGTGACACCATATGAGATATTATGTCCCACAAAGGCTTGCTGA
AACCCGATAACACAAAATTAAATGGTGAGGTAGTTGAAACTTGAAACAAGCACACACAAAGTAC
ATGAATACTAAATTTACCTGCACCCTGAAGGAGAAAAACAAAGAACAAATATTTCCTCAAGGGC
ATCACGAAGGACTTGGAAACTAGGAGAATGGGACACAAGGCAGATGCATTTATCAGCAAACGAA
TTCGCCGGAATTTGGTAAGCCTCAATTATGTCTTCACAAATAGGATCCCGAAATGCAATACAAC
TGACATAAATTTTTGAGCCATCTCCCTCTACAAGAAATCACAACATAGTTAAAAGGATGACCTG
TATACAACGGGAAAATTCGTTCGATGCCACTCATTCTAAGACGGCTAGGAAATGCCCCTCGATA
GTAAGACGGCTAGGAAATGCCCCTCGATAATGCAATTCTTCTCACATTATAGCACCTTATATAG
TTGGTCTGATTTCTTTTTATTTTTAATCTGAAATTAACTTAAAAATGGTATGGAACAAAGACCA
GGAATACGAGTTTTCTACACAACAAAATCTAAATGTTTAAATTCTGCATACGAGTACATTTTGC
TATTTTTTACCACAACCAAAACTATTTTTTCCAATTGCACCATACAAACCAGTCTTCTGGGAAC
TTAACTATTTTTTTTGGAATTGATAAGTTTTAATATCATAATTTCAGATTACAAATATTTATCA
TTTTTAAGTTAGTTTCAGATTAGAAATAAAATTAAATAAGACCAAATAGACAAGGTGTTATAAT
GCGAGAAGAATCGCATTAGCTAAGAGTGTTTTCTAGATGACTTACTAGCGAGGGGCATTTTCTA
GATGGTTAAGGAGTGGCATTGAACGAATTTTCCCGTATACAGCAAGCAATAGCAGTTTTGACCA
TAAGGTTCGAATTTATACAAAATATTATTTTTCAACCAGACCTATAGATCTGAATGTCTATGGC
ATGTACCTGTTAAAACTATAGGATAACTACGTGGATAAGTTGAGACATCATCTGTGTCCAGCCC
TGAAGAATATATTCTTACTCCCGCTGGCAAAACACA
Conservation Information
Conserved circRNAs NA
PMCS 0.057964448
Functional Information
Coding potential Y
Potential coding position 223589814-223587287(-)
Potential amino acid sequence MVSHVTLPTPGKNRVLFAIENCLLSAEAPPKEWLPHADISFQPLVQCLDVDKLILLFTAVLLER
RILLRSNKYTLLTLVSEAICHLIYPIRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSAVT
MDGVVVVDLEYNRITITEEIPPIPETEHNFLRVEILKLLQPNVMGIDFMKINLANMGDLRAGTK
SWSQEHDFQLRLIFLRFFAQILSGYRNFIDTTSATGFNSQAFLKKRSRATNQPVDSMSMCVLPA
GVRIYSSGLDTDDVSTYPRSYPIVLTEGDGSKIYVSCIAFRDPICEDIIEAYQIPANSFADKCI
CLVSHSPSFQVLRDALEEIFVLCFSPSGCSKPLWDIISHMVSHVTLPTPGKNRVLFAIENCLLS
AEAPPKEWLPHADISFQPLVQCLDVDKLILLFTAVLLERRILLRSNKYTLLTLVSEAICHLIYP
IRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSAVTMDGVVVVDLEYNRITITEEIPPIPE
TEHNFLRVEILKLLQPNVMGIDFMKINLANMGDLRAGTKSWSQEHDFQLRLIFLRFFAQILSGY
RNFIDTTSATGFNSQAFLKKRSRATNQPVDSMSMCVLPAGVRIYSSGLDTDDVSTYPRSYPIVL
TEGDGSKIYVSCIAFRDPICEDIIEAYQIPANSFADKCICLVSHSPSFQVLRDALEEIFVLCFS
PSGCSKPLWDIISHMVSHVTLPTPGKNRVLFAIENCLLSAEAPPKEWLPHADISFQPLVQCLDV
DKLILLFTAVLLERRILLRSNKYTLLTLVSEAICHLIYPIRWQHVYIPIIFSSGVDYIDAPTPY
MMGLHSGVDTSAVTMDGVVVVDLEYNRITITEEIPPIPETEHNFLRVEILKLLQPNVMGIDFMK
INLANMGDLRAGTKSWSQEHDFQLRLIFLRFFAQILSGYRNFIDTTSATGFNSQAFLKKRSRAT
NQPVDSMSMCVLPAGVRIYSSGLDTDDVSTYPRSYPIVLTEGDGSKIYVSCIAFRDPICEDIIE
AYQIPANSFADKCICLVSHSPSFQVLRDALEEIFVLCFSPSGCSKPLWDIISHMVSHVTLPTPG
KNRVLFAIENCLLSAEAPPKEWLPHADISFQPLVQCLDVDKLILLFTAVLLERRILLRSNKYTL
LTLVSEAICHLIYPIRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSAVTMDGVVVVDLEY
NRITITEEIPPIPETEHNFLRVEILKLLQPNVMGIDFMKINLANMGDLRAGTKSWSQEHDFQLR
LIFLRFFAQILSGYRNFIDTTSATGFNSQAFLKKRSRATNQPVDSMSM(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b