Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d044274_circ_g.6 |
| ID in PlantcircBase | zma_circ_007882 |
| Alias | zma_circ_0001363 |
| Organism | Zea mays |
| Position | chr3: 223587285-223590904 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d044274 |
| Parent gene annotation |
DENN domain and WD repeat-containing protein SCD1 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d044274_circ_igg.1 Zm00001d044274_circ_g.1 Zm00001d044274_circ_g.2 Zm00001d044274_circ_g.3 Zm00001d044274_circ_g.4 Zm00001d044274_circ_g.5 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d044274_T001:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.057964448 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
223589814-223587287(-) |
| Potential amino acid sequence |
MVSHVTLPTPGKNRVLFAIENCLLSAEAPPKEWLPHADISFQPLVQCLDVDKLILLFTAVLLER RILLRSNKYTLLTLVSEAICHLIYPIRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSAVT MDGVVVVDLEYNRITITEEIPPIPETEHNFLRVEILKLLQPNVMGIDFMKINLANMGDLRAGTK SWSQEHDFQLRLIFLRFFAQILSGYRNFIDTTSATGFNSQAFLKKRSRATNQPVDSMSMCVLPA GVRIYSSGLDTDDVSTYPRSYPIVLTEGDGSKIYVSCIAFRDPICEDIIEAYQIPANSFADKCI CLVSHSPSFQVLRDALEEIFVLCFSPSGCSKPLWDIISHMVSHVTLPTPGKNRVLFAIENCLLS AEAPPKEWLPHADISFQPLVQCLDVDKLILLFTAVLLERRILLRSNKYTLLTLVSEAICHLIYP IRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSAVTMDGVVVVDLEYNRITITEEIPPIPE TEHNFLRVEILKLLQPNVMGIDFMKINLANMGDLRAGTKSWSQEHDFQLRLIFLRFFAQILSGY RNFIDTTSATGFNSQAFLKKRSRATNQPVDSMSMCVLPAGVRIYSSGLDTDDVSTYPRSYPIVL TEGDGSKIYVSCIAFRDPICEDIIEAYQIPANSFADKCICLVSHSPSFQVLRDALEEIFVLCFS PSGCSKPLWDIISHMVSHVTLPTPGKNRVLFAIENCLLSAEAPPKEWLPHADISFQPLVQCLDV DKLILLFTAVLLERRILLRSNKYTLLTLVSEAICHLIYPIRWQHVYIPIIFSSGVDYIDAPTPY MMGLHSGVDTSAVTMDGVVVVDLEYNRITITEEIPPIPETEHNFLRVEILKLLQPNVMGIDFMK INLANMGDLRAGTKSWSQEHDFQLRLIFLRFFAQILSGYRNFIDTTSATGFNSQAFLKKRSRAT NQPVDSMSMCVLPAGVRIYSSGLDTDDVSTYPRSYPIVLTEGDGSKIYVSCIAFRDPICEDIIE AYQIPANSFADKCICLVSHSPSFQVLRDALEEIFVLCFSPSGCSKPLWDIISHMVSHVTLPTPG KNRVLFAIENCLLSAEAPPKEWLPHADISFQPLVQCLDVDKLILLFTAVLLERRILLRSNKYTL LTLVSEAICHLIYPIRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSAVTMDGVVVVDLEY NRITITEEIPPIPETEHNFLRVEILKLLQPNVMGIDFMKINLANMGDLRAGTKSWSQEHDFQLR LIFLRFFAQILSGYRNFIDTTSATGFNSQAFLKKRSRATNQPVDSMSM(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |