Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d044274_circ_g.6 |
ID in PlantcircBase | zma_circ_007882 |
Alias | zma_circ_0001363 |
Organism | Zea mays |
Position | chr3: 223587285-223590904 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d044274 |
Parent gene annotation |
DENN domain and WD repeat-containing protein SCD1 |
Parent gene strand | - |
Alternative splicing | Zm00001d044274_circ_igg.1 Zm00001d044274_circ_g.1 Zm00001d044274_circ_g.2 Zm00001d044274_circ_g.3 Zm00001d044274_circ_g.4 Zm00001d044274_circ_g.5 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d044274_T001:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.057964448 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
223589814-223587287(-) |
Potential amino acid sequence |
MVSHVTLPTPGKNRVLFAIENCLLSAEAPPKEWLPHADISFQPLVQCLDVDKLILLFTAVLLER RILLRSNKYTLLTLVSEAICHLIYPIRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSAVT MDGVVVVDLEYNRITITEEIPPIPETEHNFLRVEILKLLQPNVMGIDFMKINLANMGDLRAGTK SWSQEHDFQLRLIFLRFFAQILSGYRNFIDTTSATGFNSQAFLKKRSRATNQPVDSMSMCVLPA GVRIYSSGLDTDDVSTYPRSYPIVLTEGDGSKIYVSCIAFRDPICEDIIEAYQIPANSFADKCI CLVSHSPSFQVLRDALEEIFVLCFSPSGCSKPLWDIISHMVSHVTLPTPGKNRVLFAIENCLLS AEAPPKEWLPHADISFQPLVQCLDVDKLILLFTAVLLERRILLRSNKYTLLTLVSEAICHLIYP IRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSAVTMDGVVVVDLEYNRITITEEIPPIPE TEHNFLRVEILKLLQPNVMGIDFMKINLANMGDLRAGTKSWSQEHDFQLRLIFLRFFAQILSGY RNFIDTTSATGFNSQAFLKKRSRATNQPVDSMSMCVLPAGVRIYSSGLDTDDVSTYPRSYPIVL TEGDGSKIYVSCIAFRDPICEDIIEAYQIPANSFADKCICLVSHSPSFQVLRDALEEIFVLCFS PSGCSKPLWDIISHMVSHVTLPTPGKNRVLFAIENCLLSAEAPPKEWLPHADISFQPLVQCLDV DKLILLFTAVLLERRILLRSNKYTLLTLVSEAICHLIYPIRWQHVYIPIIFSSGVDYIDAPTPY MMGLHSGVDTSAVTMDGVVVVDLEYNRITITEEIPPIPETEHNFLRVEILKLLQPNVMGIDFMK INLANMGDLRAGTKSWSQEHDFQLRLIFLRFFAQILSGYRNFIDTTSATGFNSQAFLKKRSRAT NQPVDSMSMCVLPAGVRIYSSGLDTDDVSTYPRSYPIVLTEGDGSKIYVSCIAFRDPICEDIIE AYQIPANSFADKCICLVSHSPSFQVLRDALEEIFVLCFSPSGCSKPLWDIISHMVSHVTLPTPG KNRVLFAIENCLLSAEAPPKEWLPHADISFQPLVQCLDVDKLILLFTAVLLERRILLRSNKYTL LTLVSEAICHLIYPIRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSAVTMDGVVVVDLEY NRITITEEIPPIPETEHNFLRVEILKLLQPNVMGIDFMKINLANMGDLRAGTKSWSQEHDFQLR LIFLRFFAQILSGYRNFIDTTSATGFNSQAFLKKRSRATNQPVDSMSM(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |