Detail information of Os02g0177666_circ_g.2


General Information
CircRNA Name Os02g0177666_circ_g.2
ID in PlantcircBase osa_circ_013454
Alias NA
Organism Oryza sativa
Position chr2: 4282416-4284969  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os02g0177666
Parent gene annotation Hypothetical protein. (Os02t0177666-00)
Parent gene strand -
Alternative splicing Os02g0177666_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GA-AG
Number of exons covered NA:0
Os02t0177666-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGTTTCCTTTGGATTATTTGATCTGCAGTACAGAATTTTGTCACCACTGAAACTGTCTTCTC
CTTCAGAAACAGCAGGAAATGATTCTTGGCCGTACTgtacacacatcacccacccccacccagg
ccaaaccctccattgatctctagataggatgtcaataccctgacgctgacgtggcgcaaaacga
cacaaggc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2554
Transcript exons: 4282416-4284969
GTACACACATCACCCACCCCCACCCAGGCCAAACCCTCCATTGATCTCTAGATAGGATGTCAAT
ACCCTGACGCTGACGTGGCGCAAAACGACACAAGGCCGTTGGACACTCGCCTCTCCCACTGTTG
GGTGGGCCCGGGGTGGCGACTTCTCTCCCGCACACTTGGCTTTCAGGTCGTACATGGCGTCTTG
CTGCGAGCTGAGTGAACAAACTTGCTGCAGCTTAATTTGGTGCATAGGTTGGAAACCAACTCGT
TTGGTCCCCTGCGATTAGGCCAAAACACATGTTTTTACATGCGACGATGAGTCGTCGTCGTGAT
TTTGGATTGGTCTCTACCAAGCCACAAACGTGGTAGTCTAGCTGCCAGTACCAGTAGGGTAGGT
TCCAGTTTCCACCGACTGAATCTGAATTCTTTCGGAGAAATTCTGTGCAAAACCAGCTGAAAAA
TCGATATCGTCTCCGATTTCTTTGAACAGAGGAAGGTTCTGATTCTTTTTTTTTTTTTGGCTTT
TGAAACGTGGTTAGTGGCTGATGTTGAGGGGTCGGAATTTCCCGTACTGGAAACAGTTGAGGTG
TTGCTGATTAGGTGGTTCGTTGGGAGATCCTTTTTATTAAAAAAGAAGTGGACAGATTAGTGGT
TTGGTCCAAGCTCCATGGCGATGATTGCCTGAACAGCTGAGAGAGGAGAGAGGAATTTCCGTCC
ACTCCACGTCTTTTTTTCTCTGATTTATTTGTGGTAGCAGTGACCTCGCGTGGTTGTTGGCACG
CACCAGCTCGCATCCTAGCTTGCAGCCACACAACGACGCACGTTGCTACTGCAAAATCATGCTC
ATCATCATCATCGCAGTGGCACGATCCTGGAATCCAAGTTGCGATGCTTCTTCAAGCAGATGAA
AGAATGGGGGAAAAGAGAGAGAGAGAGAGAGAGATTAGAGCAAGTGTGTCTGCCACATGGATGA
TCTGAAGATCAGAAAATTCAGGAAGTGAGGTTCCACTAATGTTTGTTTTCGCAATGCGTTTTTG
GACAAGGCATTATTGCAATTAGGAACCTGGCAGGTCAAAGGCTTTTGGGTGAGGCGAACATGGG
CATTGGCAATTTAGGCTTATGCGTCTAGTATGCGTGTGTTCGGTAGTGGGCTTATAGTTGGACA
TGACATCAAGCAAAGGAGAAGTGGCAGCTTATCCTGACCGTATCTTATCTCAGTTCTCACCATG
TGGATGTCATGTCCATTGTTCACAACTTATTTTTTCTGAAGATTTCTTCTTTTGAGGACTTGTT
CTGAACCTGTTTCTCTGAAGAACTGTTCTGAACTTGTTTCTCTGAAGAACTGTTCTGAACTTGT
TTCTCTGAAGAACTGTTCTGAACTTCTAATTGATTGGATATTTAGTTGGCATAGTCAAACCTGT
ACTACTTACATGGTACACAATAAATTATGTCTACTGGTTTTAAAATGGTTGATGTTGTCATGCG
GGCCAGGAGACAGCTGGTACCGGTTAATTAGAACGAGATGTTTTCTTTTTCTAAGCCTTTCCTT
TCAAGTTCCTTTCAGAAGTTTGTTAGGTTCTAGTTTACCTATCAACGGATCATTGGTTGGTATC
TGCTTGGCGTGCAAAGTGGAGATCACATCAATTTCAGTCGCCAGCCATGCTTCAGTTCTCCTGC
ATCTTTCTGTTCATCAACCACTACTATAATGAAACCCAAACCAAACCAAACACCCAAAGCTTAG
CTAGTCTTCTAGTATTAATCAATACCACACCATCATGTGAAGCAAGTGTCACCATCACATAATG
CAGGATTAGCATGGACATGGCATCTCAAGTACCAAGTTGAATAAGGAGGTATCCAATTAGCACT
GCTGCATCTCAGAAAGCATTGCACAATTCATAGTTAGAACAGGCCAAATGAGTGGTCCATCAAC
CTAATTGCTGTCACTGGCTTGGAAATGTTTGGTGGCCCATCATGTGAAATTGTGAACAAGAAAA
GCCACAGTTGGGTGACTGCTCCAGTTGCTCAAAGTCCAGCCTGAAAATCAATCAAAGAAAGATG
GCAATGGCGTCACAAGTCAATCCTAACCTTTGTCCCATTAAATTTGAAGAGTCTATCTGACCAA
ACCAAACTCTAGTTGGTACAGTAGGTACAAATCCCAAGACTCTTTGGTTTGGTTGATGGATGCA
GCCGCCAGCATCCTGGATATCTTTGTGAAGTTTTTACCTTTTTTTTTACTTTGAATAAAACTTA
GAATTCTACCAGTGCTGCAAAAACAACAGAAAATTCAGAAAATGATTGCCACTTCAATGCTGGC
ACCAAACAAGAATCACCTGAAAAATAAGTTCAGTACCCTGCCAATTGCCATGTGCATGTACACA
TCTGAAAACCAATGACTCTCCTTGACGTTAACAGTTACAGCTTAGCTCTGCCATGTGCGTGCAT
GCACTGATGCAAAGCTGGATCCGATGTTTCCTTTGGATTATTTGATCTGCAGTACAGAATTTTG
TCACCACTGAAACTGTCTTCTCCTTCAGAAACAGCAGGAAATGATTCTTGGCCGTACT

Genomic sequence GTACACACATCACCCACCCCCACCCAGGCCAAACCCTCCATTGATCTCTAGATAGGATGTCAAT
ACCCTGACGCTGACGTGGCGCAAAACGACACAAGGCCGTTGGACACTCGCCTCTCCCACTGTTG
GGTGGGCCCGGGGTGGCGACTTCTCTCCCGCACACTTGGCTTTCAGGTCGTACATGGCGTCTTG
CTGCGAGCTGAGTGAACAAACTTGCTGCAGCTTAATTTGGTGCATAGGTTGGAAACCAACTCGT
TTGGTCCCCTGCGATTAGGCCAAAACACATGTTTTTACATGCGACGATGAGTCGTCGTCGTGAT
TTTGGATTGGTCTCTACCAAGCCACAAACGTGGTAGTCTAGCTGCCAGTACCAGTAGGGTAGGT
TCCAGTTTCCACCGACTGAATCTGAATTCTTTCGGAGAAATTCTGTGCAAAACCAGCTGAAAAA
TCGATATCGTCTCCGATTTCTTTGAACAGAGGAAGGTTCTGATTCTTTTTTTTTTTTTGGCTTT
TGAAACGTGGTTAGTGGCTGATGTTGAGGGGTCGGAATTTCCCGTACTGGAAACAGTTGAGGTG
TTGCTGATTAGGTGGTTCGTTGGGAGATCCTTTTTATTAAAAAAGAAGTGGACAGATTAGTGGT
TTGGTCCAAGCTCCATGGCGATGATTGCCTGAACAGCTGAGAGAGGAGAGAGGAATTTCCGTCC
ACTCCACGTCTTTTTTTCTCTGATTTATTTGTGGTAGCAGTGACCTCGCGTGGTTGTTGGCACG
CACCAGCTCGCATCCTAGCTTGCAGCCACACAACGACGCACGTTGCTACTGCAAAATCATGCTC
ATCATCATCATCGCAGTGGCACGATCCTGGAATCCAAGTTGCGATGCTTCTTCAAGCAGATGAA
AGAATGGGGGAAAAGAGAGAGAGAGAGAGAGAGATTAGAGCAAGTGTGTCTGCCACATGGATGA
TCTGAAGATCAGAAAATTCAGGAAGTGAGGTTCCACTAATGTTTGTTTTCGCAATGCGTTTTTG
GACAAGGCATTATTGCAATTAGGAACCTGGCAGGTCAAAGGCTTTTGGGTGAGGCGAACATGGG
CATTGGCAATTTAGGCTTATGCGTCTAGTATGCGTGTGTTCGGTAGTGGGCTTATAGTTGGACA
TGACATCAAGCAAAGGAGAAGTGGCAGCTTATCCTGACCGTATCTTATCTCAGTTCTCACCATG
TGGATGTCATGTCCATTGTTCACAACTTATTTTTTCTGAAGATTTCTTCTTTTGAGGACTTGTT
CTGAACCTGTTTCTCTGAAGAACTGTTCTGAACTTGTTTCTCTGAAGAACTGTTCTGAACTTGT
TTCTCTGAAGAACTGTTCTGAACTTCTAATTGATTGGATATTTAGTTGGCATAGTCAAACCTGT
ACTACTTACATGGTACACAATAAATTATGTCTACTGGTTTTAAAATGGTTGATGTTGTCATGCG
GGCCAGGAGACAGCTGGTACCGGTTAATTAGAACGAGATGTTTTCTTTTTCTAAGCCTTTCCTT
TCAAGTTCCTTTCAGAAGTTTGTTAGGTTCTAGTTTACCTATCAACGGATCATTGGTTGGTATC
TGCTTGGCGTGCAAAGTGGAGATCACATCAATTTCAGTCGCCAGCCATGCTTCAGTTCTCCTGC
ATCTTTCTGTTCATCAACCACTACTATAATGAAACCCAAACCAAACCAAACACCCAAAGCTTAG
CTAGTCTTCTAGTATTAATCAATACCACACCATCATGTGAAGCAAGTGTCACCATCACATAATG
CAGGATTAGCATGGACATGGCATCTCAAGTACCAAGTTGAATAAGGAGGTATCCAATTAGCACT
GCTGCATCTCAGAAAGCATTGCACAATTCATAGTTAGAACAGGCCAAATGAGTGGTCCATCAAC
CTAATTGCTGTCACTGGCTTGGAAATGTTTGGTGGCCCATCATGTGAAATTGTGAACAAGAAAA
GCCACAGTTGGGTGACTGCTCCAGTTGCTCAAAGTCCAGCCTGAAAATCAATCAAAGAAAGATG
GCAATGGCGTCACAAGTCAATCCTAACCTTTGTCCCATTAAATTTGAAGAGTCTATCTGACCAA
ACCAAACTCTAGTTGGTACAGTAGGTACAAATCCCAAGACTCTTTGGTTTGGTTGATGGATGCA
GCCGCCAGCATCCTGGATATCTTTGTGAAGTTTTTACCTTTTTTTTTACTTTGAATAAAACTTA
GAATTCTACCAGTGCTGCAAAAACAACAGAAAATTCAGAAAATGATTGCCACTTCAATGCTGGC
ACCAAACAAGAATCACCTGAAAAATAAGTTCAGTACCCTGCCAATTGCCATGTGCATGTACACA
TCTGAAAACCAATGACTCTCCTTGACGTTAACAGTTACAGCTTAGCTCTGCCATGTGCGTGCAT
GCACTGATGCAAAGCTGGATCCGATGTTTCCTTTGGATTATTTGATCTGCAGTACAGAATTTTG
TCACCACTGAAACTGTCTTCTCCTTCAGAAACAGCAGGAAATGATTCTTGGCCGTACT
Conservation Information
Conserved circRNAs NA
PMCS 0.200701002
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017