Detail information of BGIOSGA024331_circ_igg.1


General Information
CircRNA Name BGIOSGA024331_circ_igg.1
ID in PlantcircBase osi_circ_007167
Alias 7:15319221|15323895
Organism Oryza sativa ssp. indica
Position chr7: 15319221-15323895  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGATCATAGAACTTGACAGCTTTATCATAAAGTGGAGCTGAGTCTTTATCAAGATCTTTGTG
TGGGCAAATTGGCTCTAACAAGGATTTGGATACAATtgcacagcagaagaaattactgatcgta
caaaattattcatatcctattggactgctagccgcatgagatggtccatgaagacctggaagct
cacaccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGCACAGCAGAAGAAATTACTGATCGTACAAAATTATTCATATCCTATTGGACTGCTAGCCGCA
TGAGATGGTCCATGAAGACCTGGAAGCTCACACCATCTGTGAATATGACGTCTCCTCCATGAGA
AGAATTATCAGAATTATATGTGACAGATGGATTAAGCTTTGCCAGTAAAAATCGAGCCTGAAAT
TTTAGAGAAAAGTAATATATAAATTGATTTTTGAACGTGTTCATTAAATAGCCAAGAACTATCA
AACCCATCCAGAATTCCAGATCAACTGCAAATAGTACAGAACAAAAGTTATACCTGAGACCCAT
ACTGATCACAGACGACCAAACGGGGTACAGGAAACCGCTCCCTGATTATAGTATCAGCTTCCTC
ATGTGGAGATTTTAACAATTGGGCAAATACCTGAATATCATGAAAGGTTCAGCACTGGATGGCA
ATGCACTACTGCACTTTAAATGCAGCTTAGATAAAAATCTGTGTTAGCCCCTAATATATGAAGA
AAGGTATATCGATAGGAAGGTGAGATATTACACTAAAGCAGATTATAAGATGTATTTGATAAAT
AATCTCACTAAAGCAGACTATAAGATGTAGTATTTGATAAATAATCTCTGCAAACAAGAATCGA
GCTGCCATACAGCCATAGTTGACACGCTATTACCTCGTGGTCTTGTTGATCTTGGTAACCAGCA
TTTCGCCACTGTGCAATCGTTATCCCATGGAAGATAACAACAGTAAAATAAGAATCCAATAAAA
GAATCTTGTCAGCTGCAATTGCAGTTACATCTAAGAGAACTGGCTCTGGCCCAGATTGAAATGA
ATAGGATATAAGTGAAGGCTGAATCATCACGACTGCATTGGTTACATCTTCCCTGTCCAATACC
ATCCTAAAATATGCAGTTTCATCAGGACTATTGTTAAAAACCTGCATAGAAAACAAATATTTAG
TAAGCAAAGGTATGAATCTCCCATACATGTCACATTCTTTTCTTAATGAACAAAGGCGAGCTCC
CTACCTGAACAAACTGAGAACGCCTCAAATTAAAAACAAATTGGGGAAATATTGATATACGCGG
GGACAAACTAAAGGATGAAGGGGTTTCCTTCTGATAGTCACCAAATTTGGAACATAGACGTATC
AAAGCTCGATCAAGCCATCTTATAGGATCAAAATCAGCCTGAAAAGAATCCAGAACGAGATAGT
GTTACACAAAATGAACAATTGTTTGGATTAAGAATGATCTAAAATCTATACTCCCTCCGTCCCT
AAATATAAGGGATTTTGGTGTGATGTGACACATCCTAGTACAACGAATTTGGACAGAAACTGAC
CAAAATCCCTTATATTTAGGGACGGAGGGAGTACTACAGAGAAACTATGGCGCAACTGGCATCT
AGAGAAACTGCTTACAAGTATTGTTGAGGTCAGGAAGCCATATGACCACAAATAATTCCAGACT
TATGCTCTCTTGTTTTCTAAGTGCACGCTTCCTAAATTGCTAAACGGTGTGTTTTTTTGCAAAC
AAAAATCATATAGGAAAGTTGCTTTAAAATATCATATTTCCATTTTTCATGTTTTTTATTGCTA
AAATACTTAAATTAATCAGACACTAACGAGCCACCCTGATTTGTGTGCGCGGGAGAGGAGTTCC
CAACCTTCTCTCCTGAACGCACTCAGTCCCTAAAACTTATGTATCACATGGTTGTATGGGAATT
GTACAGAACAGGCCAGAAGAACATGTGAGCACAACGGCATTTAATTGTAATAAGCTTTCGAAGT
CTGAAAAAAATTGGTATCCTTTATTGCTGTTTGTGTTTAAACCTACACAAATTTGTATAAAGCA
ACACAAGGCGAGACCAAAGTCTATTTTTTTTCTTGAACACGCCAGAGAGTTGTGCTTCATTATA
TTAAGAAGAAAAGAATCTAAGGAGACTCATACAAACCCTTAAGGTTAGTACAATGACACTAAAA
GAAATGAAACTACGAGCAGCGACCCAAAAAAACTTTATGGCCAAATGCTACTAAGCCCTTTGAC
CCCCACCGTACATCACAATTTGTTCTCATCCCTAATGTCCTGTATAAGAGCATTGAAATTAGGT
GAGGTACCTCAAATACACAAAACAAAGTAAAATAAGCCATGTGATCAAAATAACAAGTTGGTTC
AGTTTGTGCTGCAAAAAGAAGCTAAGAAGTATAACATATTTGAATTTTGCATAATTGCTATGGC
AGATATAGTCAGACTCACAAGTACCTCAGTTTCCATCTTAAATGAGACCAAGCGTGCCATGACA
GCAGCTGCAGCTTCTTGGTCAAAGCCACCTATAAGCTCCTAAAGCATACAAAGTTTATTAAGGA
CAAATGACTGCACTTTTAAATTAAAACACATACACGCAGTGAAACACATTGGGAATGAATAAGC
ATTAGTCCCTGCACCTCTATTTTGAGCAAGTGAAACTTGTTCGTATCAATGAAATCAACTACAT
CTGGCAAAAGGAAAAATGAATGGGAATTCATGGGTTAAAGACAATAAAAACTTGCCTGCACACT
ATCAGAACCAGAAACCCATCTTCTGGAGATCGTAGTAGCTCGTAATCTCATTTGTCCCTCATGA
TGCTGATAACTGATGATGTGTTTCCAACTTAGTCAGGTAAATACATCTTAAACAGAGTAAGCTG
CTTAGCAAAAGCTAAAGGGAAAACAGTTTCTTACTAGGTTAAGAATTGAAAGTAGAACTGGTTA
CTTGCTGCTTGGCCAATTGTATTAGATCCATCTTTCTTTGCAATATCATATACTAAGCAGAGTG
ATGTTTTCTTGTCAAGGCCACACATCTTCCAAGCACTAGTATTTCCCTGACCAATAACGGTGTC
TGATGATAGAGGGCTTTTCTGCATGTGAAAACTGCAGTGTTAGAAACAACAAAATTACTCTGAT
TCTATAAGCTACAATCTCTAGTATATAAATGAACTTGTGGTGGTGATAGAAGTTGGTGGAATTT
TCGGTGGATAACTATATCTTTTGCACATCTGGCTTGTAAATTGTAATAAGATTTTATTTCTGAA
TTGATGTTTAGTTGCAAATTGCAAATTACATATGTTTAGCTGATATATTTATTTGGAATTGGTG
CAACTCTCAGGGTATTTAGCTAGTACTCCCTCCTTCCCAAAATACAGCTACCTAGGAAGTTTTT
GGAGGTATTAAAGATTATGGTGCAAGGTCAAAAATACCTCTCGTTATAGTCTAGGGCTAGGTAT
TTCGTGTGATATAGTAGTACATTGCTAGGGGTAGGATGGGAAAGTAAGTGCAAAAAAAAAAATC
ACCTTTTACAATCCTAGGTAGCTAAAATTGGCACAAATTTGAATCTCAAACGTAACTATATTTT
GGGACGGAGGGAGTAGTATTGAATAAAATAGATAATATACCTTCTCCAGGGAAGCACAAGGTCC
AATAATGCCTTGGATCTTGACATCTTTTGAGCAGTTAATCTCAAGAATACCACTGTACAGGAAA
TGTAAACATATTATATGAATTAAAATACTACCCTTTTTTTTTCAAAAAAATCAATGTAAAATAT
TAAAAAAGTCTCAAGTATGAGTTCCAGTGCAGCCCGGTATAACTGTTCATGAGGAAAAAACACG
ATAAAAAGAAACAGCATTAAACATGTCTCCTAATTTCAAGGAAATAATGGTAAATAAAAATTAC
TATGAGAATTGTTTGAGTTTGAAATAAAAATAAGTCCTATTCTATGCTGGAAAGCAGATTTTTA
GTTTGTAAACATATGGTGAAATTGAAATTGGCGCACTAGATGCAATGTTCGGAAAAACCACTAG
TGACTTTTAGTAACACATGCAGGTTAATGGTCTTTGTACGCAGAACGGCTGGGCTACCTTGAGA
ACTATATCTGGGCATGTGCGTTTTCAGTGCATGGTATGTACAATACTAATGAGATGTGACCAAG
TGTTTTAACTTTGAAAAGGAGGTAGTGAAAACTAATCCAACTAATAATTGTGAAAGAAAAGGGT
ATAAAGAAACAGTAGTTTGCCTATGGATAAGTTCGCTTGCATGCGAAAAGTTCAATATGGAAGG
TAACTTGAATAAAATCCTTGTCTTTAATCTTACAAATATATAACTAAACAAAGTTAGAAAACAC
TGGAATGACTCAAAATAACTCAGGCTAGGTAAAAGGATTTTACTTGAATGATAATCCAAGATCG
TTGTCTGATGACTGAAAAATGCGAAGAAGCGAGTCTTTGAAAACAGAGTGACCAAAACTTTCCG
CAAGGACAACAATTCCTCCAGTCTTCTCAATTGCAACCTTCATTTCAGCAACACCAACCTGGGA
AAATTAAAGACAAACAATAAATATTCCAAATAAGATAACCATTCATTTCAATCCACATAATAGA
GATACTGTGATGTTGTCTGAGAAAGCATCGAGCAGGTTGCATTTTGTCTGTAAAAAGGTATTTA
TGGCCTCATGTTAAAAATAAATAAGCAACATACCTGGTCAACTGCACAAGCAAACACATCCAGA
ACATGCCCCTGGTGCACAAGTTGCTTTGCAATCTGATCATAGAACTTGACAGCTTTATCATAAA
GTGGAGCTGAGTCTTTATCAAGATCTTTGTGTGGGCAAATTGGCTCTAACAAGGATTTGGATAC
AAT
Conservation Information
Conserved circRNAs osa_circ_039471
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021