Plant Circular RNA Database

Detail information of Os02g0216300_circ_g.20

			
						 General Information
					
						CircRNA Name
						Os02g0216300_circ_g.20
					
						ID in PlantcircBase
						osa_circ_013840
					
						Alias
						Os02circ08387/Os_ciR1277
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 6511334-6512170  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os02g0216300						
					
						Parent gene annotation
						
							Similar to cDNA clone:J023088C01, full insert sequence. (Os02t02
16300-01);Similar to cDNA clone:J023088C01, full insert sequence
. (Os02t0216300-04);Similar to cDNA clone:J023088C01, full inser
t sequence. (Os02t0216300-05);Similar to cDNA clone:J023088C01, 
full insert sequence. (Os02t0216300-07);Similar to cDNA clone:00
1-032-A03, full insert sequence. (Os02t0216300-09)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0216300_circ_g.2 Os02g0216300_circ_g.3 Os02g0216300_circ_g.4 Os02g0216300_circ_g.5 Os02g0216300_circ_g.6 Os02g0216300_circ_g.7 Os02g0216300_circ_g.8 Os02g0216300_circ_g.9 Os02g0216300_circ_g.10 Os02g0216300_circ_g.11 Os02g0216300_circ_g.12 Os02g0216300_circ_g.13 Os02g0216300_circ_g.14 Os02g0216300_circ_g.15 Os02g0216300_circ_g.16 Os02g0216300_circ_g.17 Os02g0216300_circ_g.18 Os02g0216300_circ_g.19 Os02g0216300_circ_g.21 Os02g0216300_circ_g.22 Os02g0216300_circ_g.23 Os02g0216300_circ_g.24 Os02g0216300_circ_g.25 Os02g0216300_circ_g.26 Os02g0216300_circ_g.27 Os02g0216300_circ_g.28 Os02g0216300_circ_g.29 Os02g0216300_circ_g.30 Os02g0216300_circ_g.31 Os02g0216300_circ_g.32 Os02g0216300_circ_g.33 Os02g0216300_circ_g.34 Os02g0216300_circ_g.35 Os02g0216300_circ_g.36 Os02g0216300_circ_g.37 Os02g0216300_circ_g.38 Os02g0216300_circ_g.39 Os02g0216300_circ_g.40 Os02g0216300_circ_g.41 Os02g0216300_circ_g.42 Os02g0216300_circ_g.43 Os02g0216300_circ_g.44 Os02g0216300_circ_g.45 Os02g0216300_circ_g.46 Os02g0216300_circ_g.47 Os02g0216300_circ_g.48 Os02g0216300_circ_g.49 Os02g0216300_circ_g.50 						
					
						Support reads
						4/10/11
					
						Tissues
						leaf and panicle/root/shoot, root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0216300-01:2
Os02t0216300-07:1
Os02t0216300-04:1
Os02t0216300-05:1
Os02t0216300-09:1

General Information
CircRNA Name	Os02g0216300_circ_g.20
ID in PlantcircBase	osa_circ_013840
Alias	Os02circ08387/Os_ciR1277
Organism	Oryza sativa
Position	chr2: 6511334-6512170 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene	Os02g0216300
Parent gene annotation	Similar to cDNA clone:J023088C01, full insert sequence. (Os02t02 16300-01);Similar to cDNA clone:J023088C01, full insert sequence . (Os02t0216300-04);Similar to cDNA clone:J023088C01, full inser t sequence. (Os02t0216300-05);Similar to cDNA clone:J023088C01, full insert sequence. (Os02t0216300-07);Similar to cDNA clone:00 1-032-A03, full insert sequence. (Os02t0216300-09)
Parent gene strand	-
Alternative splicing	Os02g0216300_circ_g.2 Os02g0216300_circ_g.3 Os02g0216300_circ_g.4 Os02g0216300_circ_g.5 Os02g0216300_circ_g.6 Os02g0216300_circ_g.7 Os02g0216300_circ_g.8 Os02g0216300_circ_g.9 Os02g0216300_circ_g.10 Os02g0216300_circ_g.11 Os02g0216300_circ_g.12 Os02g0216300_circ_g.13 Os02g0216300_circ_g.14 Os02g0216300_circ_g.15 Os02g0216300_circ_g.16 Os02g0216300_circ_g.17 Os02g0216300_circ_g.18 Os02g0216300_circ_g.19 Os02g0216300_circ_g.21 Os02g0216300_circ_g.22 Os02g0216300_circ_g.23 Os02g0216300_circ_g.24 Os02g0216300_circ_g.25 Os02g0216300_circ_g.26 Os02g0216300_circ_g.27 Os02g0216300_circ_g.28 Os02g0216300_circ_g.29 Os02g0216300_circ_g.30 Os02g0216300_circ_g.31 Os02g0216300_circ_g.32 Os02g0216300_circ_g.33 Os02g0216300_circ_g.34 Os02g0216300_circ_g.35 Os02g0216300_circ_g.36 Os02g0216300_circ_g.37 Os02g0216300_circ_g.38 Os02g0216300_circ_g.39 Os02g0216300_circ_g.40 Os02g0216300_circ_g.41 Os02g0216300_circ_g.42 Os02g0216300_circ_g.43 Os02g0216300_circ_g.44 Os02g0216300_circ_g.45 Os02g0216300_circ_g.46 Os02g0216300_circ_g.47 Os02g0216300_circ_g.48 Os02g0216300_circ_g.49 Os02g0216300_circ_g.50
Support reads	4/10/11
Tissues	leaf and panicle/root/shoot, root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0216300-01:2 Os02t0216300-07:1 Os02t0216300-04:1 Os02t0216300-05:1 Os02t0216300-09:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GGATTTCAGAGGTGATGTTACTAGCTTTGAACTCATTAGCACGTTCAGGTTAGTCCTCCTAGGT
GGGTTGGATCCTTTCTTGATCGGGGCTGTTACAGATcatagcatctccactctggcaagacagt
tcatgtgtgcaattcctcccattctccaattttcatagaccactcttgaaatttatgcagttcc
gtgggcac

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							CATAGCATCTCCACTCTGGCAAGACAGTTCATGTGTGCAATTCCTCCCATTCTCCAATTTTCAT
AGACCACTCTTGAAATTTATGCAGTTCCGTGGGCACATCTGTTTCAGAGCCATTAGAGCAGAAT
TGGCACAAGGTAATCAATCAATAGGTCCCTTTCGTTTGGTTTCTGTGAAATATTCTTCCAGTGA
TCGATCACATCTCATGATGAAGTTCTTAAACTTTCATTCTGTCAGTCCCTATATATACATACAT
CATGATGATGGTTAAACTTCAATTTGGAGTAATAATACTTATGTTACGTTACCTCAATAGGCTT
TTTTTCATCGGAGTGGAGGAAGAATGCGTAGAACCCTCCAAGCACAGTTGCTGCGGCCATGGCC
CAAACCAGCACCTGAACCGGGAAAGGCATGATGGCCGCCACTTTATATGAAAACACGGCGGTGA
GCATCGTCGTCAGGAGCCACACCGCCGTCTTGATGTGGTGGCGGCGAGGCGACTCCGGCGGCGT
CTTCTCAAATAATCGGAGGAAGTAGAAGAGCGATACGAGGTCAACGTAGGAGAAGACCACGAAG
AAGATGGTTGCCAAGTCTCTATCTGATCTGTACACTGCCATTCCCGAGTTGAAGGTCAGGAAGG
CGAAGCCGAGGAGCGTCAGGGGAGATAACCCCATGTCATGCTGCTCCGCCGGCGCCTGCGGATC
GCGCAGAGGTTGCTCTAGATGGCCCTGCTCCATGGATTTCAGAGGTGATGTTACTAGCTTTGAA
CTCATTAGCACGTTCAGGTTAGTCCTCCTAGGTGGGTTGGATCCTTTCTTGATCGGGGCTGTTA
CAGAT

Sequences
Splice junction sequence	GGATTTCAGAGGTGATGTTACTAGCTTTGAACTCATTAGCACGTTCAGGTTAGTCCTCCTAGGT GGGTTGGATCCTTTCTTGATCGGGGCTGTTACAGATcatagcatctccactctggcaagacagt tcatgtgtgcaattcctcccattctccaattttcatagaccactcttgaaatttatgcagttcc gtgggcac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATAGCATCTCCACTCTGGCAAGACAGTTCATGTGTGCAATTCCTCCCATTCTCCAATTTTCAT AGACCACTCTTGAAATTTATGCAGTTCCGTGGGCACATCTGTTTCAGAGCCATTAGAGCAGAAT TGGCACAAGGTAATCAATCAATAGGTCCCTTTCGTTTGGTTTCTGTGAAATATTCTTCCAGTGA TCGATCACATCTCATGATGAAGTTCTTAAACTTTCATTCTGTCAGTCCCTATATATACATACAT CATGATGATGGTTAAACTTCAATTTGGAGTAATAATACTTATGTTACGTTACCTCAATAGGCTT TTTTTCATCGGAGTGGAGGAAGAATGCGTAGAACCCTCCAAGCACAGTTGCTGCGGCCATGGCC CAAACCAGCACCTGAACCGGGAAAGGCATGATGGCCGCCACTTTATATGAAAACACGGCGGTGA GCATCGTCGTCAGGAGCCACACCGCCGTCTTGATGTGGTGGCGGCGAGGCGACTCCGGCGGCGT CTTCTCAAATAATCGGAGGAAGTAGAAGAGCGATACGAGGTCAACGTAGGAGAAGACCACGAAG AAGATGGTTGCCAAGTCTCTATCTGATCTGTACACTGCCATTCCCGAGTTGAAGGTCAGGAAGG CGAAGCCGAGGAGCGTCAGGGGAGATAACCCCATGTCATGCTGCTCCGCCGGCGCCTGCGGATC GCGCAGAGGTTGCTCTAGATGGCCCTGCTCCATGGATTTCAGAGGTGATGTTACTAGCTTTGAA CTCATTAGCACGTTCAGGTTAGTCCTCCTAGGTGGGTTGGATCCTTTCTTGATCGGGGCTGTTA CAGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.338669843

Conservation Information
Conserved circRNAs	NA
PMCS	0.338669843

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0216300_circ_g.20

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