Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05320_circ_g.1 |
ID in PlantcircBase | ath_circ_000793 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 1556658-1556867 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder, CIRI-full |
Parent gene | AT1G05320 |
Parent gene annotation |
unknown protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 10 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G05320.6:1 AT1G05320.1:1 AT1G05320.5:1 AT1G05320.3:1 AT1G05320.9:1 AT1G05320.2:1 AT1G05320.8:1 AT1G05320.4:1 AT1G05320.7:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.293308594 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1556772-1556864(+) |
Potential amino acid sequence |
MVSQIEKLSALVAEKSVLESKFEQVEIHLKEEISSLEEEKNQVNEIYQSTKNELVKLQAQLQVD KSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEISSLEEEKNQVNEIYQSTKNELVKLQ AQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEISSLEEEKNQVNEIYQSTKN ELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |