Detail information of Os05g0564200_circ_g.3


General Information
CircRNA Name Os05g0564200_circ_g.3
ID in PlantcircBase osa_circ_042181
Alias NA
Organism Oryza sativa
Position chr5: 28082052-28082315  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0564200
Parent gene annotation U2 snRNP auxiliary factor, small subunit. (Os05t0564200-01)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0564200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATTGGCAGGGAGCTCAGGAGGAAGCTTTATGGGGGGCGATCCAGGAGGAGCCATGGGAGAA
GCCGCAGCCCAAGCCCACGCCACAGGAGGGGCAATCaacaggcagtcgctgcgcataatgccct
tcaaggtcgcttctactcagggcgcccaataattgttgagtattcccctgtgactgatttccgt
gaggcgac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 264
Transcript exons: 28082052-28082315
AACAGGCAGTCGCTGCGCATAATGCCCTTCAAGGTCGCTTCTACTCAGGGCGCCCAATAATTGT
TGAGTATTCCCCTGTGACTGATTTCCGTGAGGCGACCTGTAGGCAGTTTGAGGAGAACAGCTGC
AACCGTGGGGGCTACTGTAATTTTATGCATGTAAAGCAGATTGGCAGGGAGCTCAGGAGGAAGC
TTTATGGGGGGCGATCCAGGAGGAGCCATGGGAGAAGCCGCAGCCCAAGCCCACGCCACAGGAG
GGGCAATC

Genomic sequence AACAGGCAGTCGCTGCGCATAATGCCCTTCAAGGTCGCTTCTACTCAGGGCGCCCAATAATTGT
TGAGTATTCCCCTGTGACTGATTTCCGTGAGGCGACCTGTAGGCAGTTTGAGGAGAACAGCTGC
AACCGTGGGGGCTACTGTAATTTTATGCATGTAAAGCAGATTGGCAGGGAGCTCAGGAGGAAGC
TTTATGGGGGGCGATCCAGGAGGAGCCATGGGAGAAGCCGCAGCCCAAGCCCACGCCACAGGAG
GGGCAATC
Conservation Information
Conserved circRNAs NA
PMCS 0.302404482
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study