Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d024408_circ_g.3 |
ID in PlantcircBase | zma_circ_010218 |
Alias | zma_circ_0000165 |
Organism | Zea mays |
Position | chr10: 69368220-69369314 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d024408 |
Parent gene annotation |
Galactose mutarotase-like superfamily protein |
Parent gene strand | - |
Alternative splicing | Zm00001d024408_circ_g.1 Zm00001d024408_circ_g.2 Zm00001d024408_circ_g.4 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d024408_T003:3 Zm00001d024408_T001:3 Zm00001d024408_T004:3 Zm00001d024408_T002:3 Zm00001d024408_T006:3 Zm00001d024408_T005:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.220593089 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
69368296-69368222(-) 69368244-69369229(-) |
Potential amino acid sequence |
MDYLDNLKAKERFTEQGDAIVFESEFGSHGNLEQHGFARNRFWTIDNNPPPLPLNPAIKAFVDL ILKPSEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNNNPDGRPFSYTFAYHTYFSVSDISEV RVEGLETMDYLDNLKAKERFTEQGDAIVFESEFGSHGNLEQHGFARNRFWTIDNNPPPLPLNPA IKAFVDLILKPSEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNNNPDGRPFSYTFAYHTYFS VSDISEVRVEGLETMDYLDNLKAKERFTEQGDAIVFESEFGSHGNLEQHGFARNRFWTIDNNPP PLPLNPAIKAFVDLILKPSEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNNNPDGRPFSYTF AYHTYFSVSDISEVRVEGLETMDYLDNLKAKERFTEQGDAIVFESE(-) MLLFLNQNLDHMEILNNMDSLGTGFGLLTTIHLLYH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |