Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024704_circ_g.2 |
ID in PlantcircBase | zma_circ_010241 |
Alias | Zm10circ00029 |
Organism | Zea mays |
Position | chr10: 84199896-84206650 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d024704 |
Parent gene annotation |
DNA-(apurinic or apyrimidinic site) lyase |
Parent gene strand | - |
Alternative splicing | Zm00001d024704_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d024704_T005:3 Zm00001d024704_T001:3 Zm00001d024704_T003:2 Zm00001d024704_T006:3 Zm00001d024704_T002:3 Zm00001d024704_T004:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.093688631 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
84199930-84199929(+) 84199985-84205361(-) 84199921-84206587(-) |
Potential amino acid sequence |
MKLFCPLTVPKQGSSRSSFSFLGTCQLDDRTKRSHRLCPFLCAGACKHLPAFLYWNNMLPKRRL SAGVNPGCPQSIQFNATAMHFT*(+) MRIDYFLVSEQLKDRIVSCEMHGRGIELDGLWTARIHPSRETAFWQHIIPVEESW*(-) MAVALNWMDCGQPGFTPAERRRFGNILFQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |