Detail information of BGIOSGA032084_circ_igg.1


General Information
CircRNA Name BGIOSGA032084_circ_igg.1
ID in PlantcircBase osi_circ_008875
Alias Chr10:12808688_12810933(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 9123872-9126122  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAGATGCCATTGCATCTCCATTCTCTCTCTTCGGTAATGTTCAGATTCCTGTTTCCGCCCAG
CCATTTGTAATCCATGTATCAGTACTTCATATGTACcctgtagataactattcagaaaaggtgc
aggagaatgctgaacaggatagtaaattaccctgccccagttcaagtttcgtgaaacctttttg
caatagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTAGATAACTATTCAGAAAAGGTGCAGGAGAATGCTGAACAGGATAGTAAATTACCCTGCC
CCAGTTCAAGTTTCGTGAAACCTTTTTGCAATAGCAGCCAAGAGCAATAGAGAGTTTGTATAGG
GGCTGCTGAGTAAAGGTTTGATAAAAGTGGCAGCACTAGTCTTCACCATGTGCACCTTTAGAAG
TTGTCTACTGATGAATGACAACAGCAATACATTGAAATGGAAAAGTGAACAGCCCGTGTAGCAG
CTTGTGCAGTCATGCTCGTGAAGATGCTGCTTTTAGAAGGTAAAACCATCAGCATAAATTTTTC
AACAACTCTGATGATTACTAGACAAAATAAACTGCTATCACTCTGTGTATGCAATCTGCATTGA
GTAAGACAACTACTAATTACTAAACAAACCCACCTCAGAAAGAGCATTTGTGTTACATAATGGT
GATCCTAGATGGACTCCATAATTTAATGACATCTGCAAACAATAAGATGAATCAAATTAATCAC
TCAGCACAAATTTCACAGAATTGTATTGCGGTCCTTAAAGATTGGAGCTATACCTTGACATATT
CATCTACAATGCAGTAATTCATCAATAATATGCTCTCAAAAGCACAAAAACTGGTGGATAGTAT
GTAGCCAGTACTTGATTTTGTGTACCGAATGAACGGTCCAGACCTCATTATGAGTTACTGAGAA
TACCAAAAAGCGGACAACATGAGAAAACAATACAGCAAACTTTGCATAATCCTTAAAAAGGACT
AAAGCTTGATGAGTTGCCTTGAATAGTTGAGTTGGTTGATAGATACAAAGAGAACACTAGACTG
CAAGAATTCTAAATAGTCAACAATGTAAAGCATAAAAGGGAAGACTGTTTCATAAATGATATGC
ACCTTAGTGACTAAAAAGTAAACCCTAATTAACAGCTCGAATTAACTAAGCAAGTTACACTGCT
ACCATATTTGGAGCATTGATGCCACCCTGCACCCTGCACTTTTTTTCCTAAAATAGAACTTACA
ATAGATATGAACATGCAAATAGTTTGTCACGACATGAATAAGAAACAACTACTTAACACAACAA
CCGCATGCATCAATACAACACTACAAAACAAGTTGCTTCTCAACCTTAAAAAAAATGTAAACTA
GAAGTTTATCTAACTTAGAATTCCAGCTTGTGCAAAACAAAGTTACAAAATTGTGTAATAACTC
TTCAATTGTGGTTCCTGCCAACGGAAGTTTCTTTATGACATGTCTTCATCCATATCATTTAAGT
TGTACTGAAGCAGTTGATCTCCAATGGACCGCTTTCTTAAAATAAGTTCGGAAATACTTAAGGA
ATTTTGGTGAACGCAAAAAGGCAACTAAACTGAACAGGGTATTTAACTATTTTTTTTAAACTCG
TTAGTAAGTGTCCCAGAATTCGCAGCAAATTGATTGTAATAAGTATTAACAGATGAAATAAAAC
AGAACTCTCCAAAAAACTATTGAGCTCCTTGTTTTTCACTGTATAAAACTGCGGGCCCTATCTT
TATATTGCAGTAATTAGAAGTGTCTTCAACAAAAGGAAGAGGCTAGGAAAGTCTACGCAAAAAA
GATAGAGTTTGCCTTACACTTGATTTTTTTAAAAAACTTCCAAGCTCTCGAATTAAGTTGTTTG
AATAAGATGTTTCTTTACAATCAGTCTTTTGGAGACTTCCAACTGCTCAGAGTCATCTATAAAT
TACCACCACAATCAATGTTTCTGGTAAACACTTCAACTGCCCTACTCCAATGGATTTTCCCCGT
TTCAAATAGCAATTGATAACATCACGATAATCAGTTTCAGCTTTCAAGGTTCTCAAATCATATA
GATGCTTTTGCACTTCTTTTTTTCAATTTAAATGTTACCATCCTTGGGGCAGCAGTCCTACCAA
GTACAGAGTAAAGATTAACCAAATCATTTATAGTTCCATGTTTAGGTATATATTAAATAAAATT
AAAAATACCAACAGACCTGTGTGTCAATATCATCATGTTCAGGCAGCAATAGGTGCTGGAAGGA
TTCAGCTAATGAAAGATGAAGATTTTGGACCATCTTCTAACCATGAAAATCACAAAACAGATGG
TTACATAAGCTATCTTCAGGGGAATGCTCATTGCGATACTGAAGATGCCATTGCATCTCCATTC
TCTCTCTTCGGTAATGTTCAGATTCCTGTTTCCGCCCAGCCATTTGTAATCCATGTATCAGTAC
TTCATATGTAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021