Plant Circular RNA Database

Detail information of Os04g0531300_circ_igg.1

			
						 General Information
					
						CircRNA Name
						Os04g0531300_circ_igg.1
					
						ID in PlantcircBase
						osa_circ_024667
					
						Alias
						Os_ciR1811
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr4: 26571401-26575056  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							NA						
					
						Support reads
						7
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os04g0531300_circ_igg.1
ID in PlantcircBase	osa_circ_024667
Alias	Os_ciR1811
Organism	Oryza sativa
Position	chr4: 26571401-26575056 JBrowse»
Reference genome	IRGSP-1.0.38
Type	igg-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	NA
Support reads	7
Tissues	root
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACTTCGCCTAGTGCTGAGCTTCAATCAGTGCCTCACCAAATGCCCAAGCTTTGCTGCTTCTATT
GTGTCAGTCAAGTCACGGCCCCGGTGTTTAACTCAGgataatattctgtttggttgttggacat
cacctatgggtggggcttcagtctcgatctctcaggttcttaaatcggggttctggaagcacca
agtgtcca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 196
Transcript exons: 26571401-26571476,26574937-26575056
GATAATATTCTGTTTGGTTGTTGGACATCACCTATGGGTGGGGCTTCAGTCTCGATCTCTCAGG
TTCTTAAATCGGTGGGAAGCACCATGCCCTGCACTTCGCCTAGTGCTGAGCTTCAATCAGTGCC
TCACCAAATGCCCAAGCTTTGCTGCTTCTATTGTGTCAGTCAAGTCACGGCCCCGGTGTTTAAC
TCAG
Transcript length: 241
Transcript exons: 26571401-26571477,26574893-26575056
GATAATATTCTGTTTGGTTGTTGGACATCACCTATGGGTGGGGCTTCAGTCTCGATCTCTCAGG
TTCTTAAATCGGGGAGGCCGAGGAAGAGGAGCAGGACAAAGAACGGCATTTCTGGTTTGGGAAG
CACCATGCCCTGCACTTCGCCTAGTGCTGAGCTTCAATCAGTGCCTCACCAAATGCCCAAGCTT
TGCTGCTTCTATTGTGTCAGTCAAGTCACGGCCCCGGTGTTTAACTCAG
						
					

						Genomic sequence
						
							GATAATATTCTGTTTGGTTGTTGGACATCACCTATGGGTGGGGCTTCAGTCTCGATCTCTCAGG
TTCTTAAATCGGGGTTCTGGAAGCACCAAGTGTCCAAGTCTGCATCACCGTTGACATCAGAAAT
TAAAGCCGATTCACACGGGTAATTCTTTTGGGTTAGCTTATTATATCACCATATCTAAGACAAT
TGCTGCAGTAGACAAATTATGGCGTGGTTGTCATCTTGTACACTTCCAGAAATTCAGTTTCTTG
CAATAAGTAAGGTTATTAAAGGTCAAATGAACTAAACTTGTACACCAATACCTAACTCCTCAAC
AAACCTATTTTTATATTTTACTGGAGCGAAATAAAAGCTCGTGCCTTATCTCAAAGCTAGAATA
TGTAAGCCAAAGGAGGTCCTCTACCTCGTGAGAAGGCTCTCATCGTCAGTTTGTTGGTCTATCA
TCCGTAGCTAAAATTTGTATTTTGGAACTTAATTTTGGAGTTAATTTTGTTTTTGTATTTTAGT
CTATTTGCCAGCCTTGGTTTTTAAATCGCGAATAACTTAGATATAAAAATTGCCAATAAATTGT
TTTTGACTGGTTCATTCATTTTTCTATAGTTTGTTAACAGTATCTCAACCACTCATGAATCTCC
ATGCACATTTGAATGCTACAGATTCAACTATACACCCTTTAAAATTGTTTGTTCATGTACCTGT
ATTTGGTCTTGTTTGGCTCTTGTCCAGTGAACCATGACCAAATTTTTTTTAGCCGGGCCGGCCT
AAAATAGGCGGACCAAATTTACTTAAGAAAGAGGTATGTACATATTTACAAGACCATGACCAAA
TTTGATCGCAATTTCTCCTACAAGGACATGTTCCACAAAAGTTTTGAGGTTTGCTTCAATGCAT
AATTGAAGCATGTTTATCCAGAAATTTTAGTCCTTGAAGCAAGAAACTTGCAGACATATCACTT
TGTCTAGTAACTGGAAGCACTAATCGTGATCCGCAAATGGACAAAAACTGGAAAAGATGAGCTC
GGGGAAAAAACTGAATAAGCTACCACTGAACGAAATCTGCAAAGTATAGACTCCCCGGGTCCTC
AATTTTGATGCTTAGATTCCAACTTTTTTCTTCAAACTTCTAACTTTTTCATCACATCGAACTT
TCCTATAGACACAAACTTCTAATTTTTCTATCACATTATTTTAATTTCTTTAAACTTCCAATTC
CAATTTTGGTATGGAACTAAAGACAGCCTACGAGGGATTCAACATCTCGATTATGAGAGTACGG
GCAGGGTGCAGACAGTAGACGTCGACAATCAGATCAGAGGAGAAAATTTATAGTGGGAGGTAAA
GCCCGAAATGTTTAATTTCAGATCTGTTATTTCTCAGCTCTTATCTGAACACTGAGCTATTCTC
GTAACACCACTTTACATCATAGATATAAACATAACAACACCAAAGTTCTGATCTTAAACAAAAC
AGGATGATACTAGTTAGGTACTGATTAACTACATCCGGCTGATGGGAACGGGTCATCATCTACC
TCCAGAGAGGTCAGAGAAGGTGCCTGCGCTGGTGGATGTCATCGGGTAGGACATGACGTAGGGG
TCGAACCCCTGGTCCTGCATGAGCGCCAGCATGTTGAAGCTCTGGTACGTCGGCGACAGCTCCG
GCAGCGGCACGTCGCCTTCCAGGTACTGCACAAGCTGCCTCGTCCCCGGCCGTGCGCCGGGCAG
CGGGTGCGAGCACAGCAGGCCCAGCCGCAGCACGAGGCTCGCCTCGCTCTCGACGAAGTCGCCG
TGCAGGCGCGGGTCCACCGTGTCCGTGATCGCCCCGGCGCGCCACCGGTCGAGCACCCAGTCGA
CGAGCACGACGCGGTTGTCGCGCGCGTCCTGCGCCACGGGCTTCCGCCCGCACGCCACCTCCAG
CATGAAGGCCCCGAACGCGAACACGTCCGACGCCTTGGACGCCTTGCCGGTGTGCCCCAGCTCC
GGCGCCAGGTAGCCCATGGTGCCCACCACGTGCGTCGTGTGCGGGTCGGTGCCGTGGTCGTACA
GCCGCGCCAGGCCGAAGTCGCCGAGCCGGCCGTTCATGTCGGCGTCGAGCAGCACGTTGCTGGC
CTTGATGTCCCTGTGCACCACCACCTGCTCCCAGTCCTCGTGGAGGTAGAGCAGCCCGGACGCG
ACGCCCCTGATGATGCGGAACCTCTGCGCCCATCTCAGGGTGATCTTGCCCTGGTCGTACAGCT
GCTTGTCCAGGCTGCCGTTGGGCATGTAGTCGTACACCAGCAGGAGCTCGCCCTTGCGCCGGCA
GTAGCCGAGCAGCTGCACGAGGTTCCGGTGCCGGAGCCGGCCGATGCTGACCACCTCCGCCACG
AACTCCCTCATCCCCTGCCTCGACCCGTGCGCCACCTTCTTCACGGCGACCTCCGCCTTGGACG
ACGGGAGCACGCCACGGTACACGCGCCCGAACCCGCCGATGCCGAGGAGCCGCTTGTCGCTGAA
CCCGTCGGTGGCGTGGAACAGGTCCTTGTACGAGAACCTGTGAGGCCCGAACGTCACCTCCCAC
TCCTCCTTGAGCTCCGAGAACATGCGCCGCCGCCGCATGAACACGAACACGGCGGCGGCCACCG
CGAAGACGAGCACCGCCGAGGCTATCGGCAGCACGATCTCAAGCGTCTTGGACCGCGGCTTGGG
GAACGTGACCGGCAGGGAGGGCAGGGATGAGATGTTGAGCGCCGGCGCGGCGCCGTTCATCTTG
AAGCTCCAGCCGAGCACGTAGTGGCGGCAGAAGAGGATGCCGGTCGCCGAGGAGAAGCCGACGT
AGGCGGTGTCATCAATGACGGAGGAGATGTTGACGATTTTGGACAGCAGGGGCTTCTTTGGCCG
CGCCACCTCCAGCGGCGCCATGGTGACATTGACCTGCATGGTCTGGCCGTCGAAGTCCACCCAC
ACCTGCATCGGCCTGCGGCTCACCAGGCTCATGTTCTTGAAGTCGCCGGTGCCGTCGTCGTAGT
ACCCGGCGTTGTCGGCGTCGACGGAGTTGAGGCCGTTGACGTCGATCCCGACATGGTTGCCGCT
CATGTCGTTGAACTCCGAGTTGAGGATGGTGTCGAACTCCACGGCGAAGAGGTGGTTGGTCGCG
TTGCCGTTGTTGGCGGAGTTGACGAGCCCCATGAACTGCCCCGGCAGCGCCGAGGTGAGGTTCT
TGCTCTTGGCGATGATGAACGCCATGCCGTGGCTGCTCAGGTCCTCGAACGCGCCGATGATGCC
GATGACGAAGGCCGTGGAGAAGGACTGCATCGCCGTGCTGTTGGGCCCCCTCTGGAACTGGAGC
GGCGACGGGAAGAAGGCGTGGCCCTTGAGCTGGTTCGTGCCGTTGGTCAGCATGAGCAGCCCGT
TCGAGGTCACCGTTGCCATGCCGTCGAAGCTGAGGTTGGCGCCGGTGAACCCGTTGAAGACGAA
CCGCTCGTCGGTCGCCGCCGCCGGGCGGAGGCAGCCGAGGCCGAGGAAGAGGAGCAGGACAAAG
AACGGCATTTCTGGTTTGGGAAGCACCATGCCCTGCACTTCGCCTAGTGCTGAGCTTCAATCAG
TGCCTCACCAAATGCCCAAGCTTTGCTGCTTCTATTGTGTCAGTCAAGTCACGGCCCCGGTGTT
TAACTCAG
						
					

			
		

Sequences
Splice junction sequence	ACTTCGCCTAGTGCTGAGCTTCAATCAGTGCCTCACCAAATGCCCAAGCTTTGCTGCTTCTATT GTGTCAGTCAAGTCACGGCCCCGGTGTTTAACTCAGgataatattctgtttggttgttggacat cacctatgggtggggcttcagtctcgatctctcaggttcttaaatcggggttctggaagcacca agtgtcca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 196 Transcript exons: 26571401-26571476,26574937-26575056 GATAATATTCTGTTTGGTTGTTGGACATCACCTATGGGTGGGGCTTCAGTCTCGATCTCTCAGG TTCTTAAATCGGTGGGAAGCACCATGCCCTGCACTTCGCCTAGTGCTGAGCTTCAATCAGTGCC TCACCAAATGCCCAAGCTTTGCTGCTTCTATTGTGTCAGTCAAGTCACGGCCCCGGTGTTTAAC TCAG Transcript length: 241 Transcript exons: 26571401-26571477,26574893-26575056 GATAATATTCTGTTTGGTTGTTGGACATCACCTATGGGTGGGGCTTCAGTCTCGATCTCTCAGG TTCTTAAATCGGGGAGGCCGAGGAAGAGGAGCAGGACAAAGAACGGCATTTCTGGTTTGGGAAG CACCATGCCCTGCACTTCGCCTAGTGCTGAGCTTCAATCAGTGCCTCACCAAATGCCCAAGCTT TGCTGCTTCTATTGTGTCAGTCAAGTCACGGCCCCGGTGTTTAACTCAG
Genomic sequence	GATAATATTCTGTTTGGTTGTTGGACATCACCTATGGGTGGGGCTTCAGTCTCGATCTCTCAGG TTCTTAAATCGGGGTTCTGGAAGCACCAAGTGTCCAAGTCTGCATCACCGTTGACATCAGAAAT TAAAGCCGATTCACACGGGTAATTCTTTTGGGTTAGCTTATTATATCACCATATCTAAGACAAT TGCTGCAGTAGACAAATTATGGCGTGGTTGTCATCTTGTACACTTCCAGAAATTCAGTTTCTTG CAATAAGTAAGGTTATTAAAGGTCAAATGAACTAAACTTGTACACCAATACCTAACTCCTCAAC AAACCTATTTTTATATTTTACTGGAGCGAAATAAAAGCTCGTGCCTTATCTCAAAGCTAGAATA TGTAAGCCAAAGGAGGTCCTCTACCTCGTGAGAAGGCTCTCATCGTCAGTTTGTTGGTCTATCA TCCGTAGCTAAAATTTGTATTTTGGAACTTAATTTTGGAGTTAATTTTGTTTTTGTATTTTAGT CTATTTGCCAGCCTTGGTTTTTAAATCGCGAATAACTTAGATATAAAAATTGCCAATAAATTGT TTTTGACTGGTTCATTCATTTTTCTATAGTTTGTTAACAGTATCTCAACCACTCATGAATCTCC ATGCACATTTGAATGCTACAGATTCAACTATACACCCTTTAAAATTGTTTGTTCATGTACCTGT ATTTGGTCTTGTTTGGCTCTTGTCCAGTGAACCATGACCAAATTTTTTTTAGCCGGGCCGGCCT AAAATAGGCGGACCAAATTTACTTAAGAAAGAGGTATGTACATATTTACAAGACCATGACCAAA TTTGATCGCAATTTCTCCTACAAGGACATGTTCCACAAAAGTTTTGAGGTTTGCTTCAATGCAT AATTGAAGCATGTTTATCCAGAAATTTTAGTCCTTGAAGCAAGAAACTTGCAGACATATCACTT TGTCTAGTAACTGGAAGCACTAATCGTGATCCGCAAATGGACAAAAACTGGAAAAGATGAGCTC GGGGAAAAAACTGAATAAGCTACCACTGAACGAAATCTGCAAAGTATAGACTCCCCGGGTCCTC AATTTTGATGCTTAGATTCCAACTTTTTTCTTCAAACTTCTAACTTTTTCATCACATCGAACTT TCCTATAGACACAAACTTCTAATTTTTCTATCACATTATTTTAATTTCTTTAAACTTCCAATTC CAATTTTGGTATGGAACTAAAGACAGCCTACGAGGGATTCAACATCTCGATTATGAGAGTACGG GCAGGGTGCAGACAGTAGACGTCGACAATCAGATCAGAGGAGAAAATTTATAGTGGGAGGTAAA GCCCGAAATGTTTAATTTCAGATCTGTTATTTCTCAGCTCTTATCTGAACACTGAGCTATTCTC GTAACACCACTTTACATCATAGATATAAACATAACAACACCAAAGTTCTGATCTTAAACAAAAC AGGATGATACTAGTTAGGTACTGATTAACTACATCCGGCTGATGGGAACGGGTCATCATCTACC TCCAGAGAGGTCAGAGAAGGTGCCTGCGCTGGTGGATGTCATCGGGTAGGACATGACGTAGGGG TCGAACCCCTGGTCCTGCATGAGCGCCAGCATGTTGAAGCTCTGGTACGTCGGCGACAGCTCCG GCAGCGGCACGTCGCCTTCCAGGTACTGCACAAGCTGCCTCGTCCCCGGCCGTGCGCCGGGCAG CGGGTGCGAGCACAGCAGGCCCAGCCGCAGCACGAGGCTCGCCTCGCTCTCGACGAAGTCGCCG TGCAGGCGCGGGTCCACCGTGTCCGTGATCGCCCCGGCGCGCCACCGGTCGAGCACCCAGTCGA CGAGCACGACGCGGTTGTCGCGCGCGTCCTGCGCCACGGGCTTCCGCCCGCACGCCACCTCCAG CATGAAGGCCCCGAACGCGAACACGTCCGACGCCTTGGACGCCTTGCCGGTGTGCCCCAGCTCC GGCGCCAGGTAGCCCATGGTGCCCACCACGTGCGTCGTGTGCGGGTCGGTGCCGTGGTCGTACA GCCGCGCCAGGCCGAAGTCGCCGAGCCGGCCGTTCATGTCGGCGTCGAGCAGCACGTTGCTGGC CTTGATGTCCCTGTGCACCACCACCTGCTCCCAGTCCTCGTGGAGGTAGAGCAGCCCGGACGCG ACGCCCCTGATGATGCGGAACCTCTGCGCCCATCTCAGGGTGATCTTGCCCTGGTCGTACAGCT GCTTGTCCAGGCTGCCGTTGGGCATGTAGTCGTACACCAGCAGGAGCTCGCCCTTGCGCCGGCA GTAGCCGAGCAGCTGCACGAGGTTCCGGTGCCGGAGCCGGCCGATGCTGACCACCTCCGCCACG AACTCCCTCATCCCCTGCCTCGACCCGTGCGCCACCTTCTTCACGGCGACCTCCGCCTTGGACG ACGGGAGCACGCCACGGTACACGCGCCCGAACCCGCCGATGCCGAGGAGCCGCTTGTCGCTGAA CCCGTCGGTGGCGTGGAACAGGTCCTTGTACGAGAACCTGTGAGGCCCGAACGTCACCTCCCAC TCCTCCTTGAGCTCCGAGAACATGCGCCGCCGCCGCATGAACACGAACACGGCGGCGGCCACCG CGAAGACGAGCACCGCCGAGGCTATCGGCAGCACGATCTCAAGCGTCTTGGACCGCGGCTTGGG GAACGTGACCGGCAGGGAGGGCAGGGATGAGATGTTGAGCGCCGGCGCGGCGCCGTTCATCTTG AAGCTCCAGCCGAGCACGTAGTGGCGGCAGAAGAGGATGCCGGTCGCCGAGGAGAAGCCGACGT AGGCGGTGTCATCAATGACGGAGGAGATGTTGACGATTTTGGACAGCAGGGGCTTCTTTGGCCG CGCCACCTCCAGCGGCGCCATGGTGACATTGACCTGCATGGTCTGGCCGTCGAAGTCCACCCAC ACCTGCATCGGCCTGCGGCTCACCAGGCTCATGTTCTTGAAGTCGCCGGTGCCGTCGTCGTAGT ACCCGGCGTTGTCGGCGTCGACGGAGTTGAGGCCGTTGACGTCGATCCCGACATGGTTGCCGCT CATGTCGTTGAACTCCGAGTTGAGGATGGTGTCGAACTCCACGGCGAAGAGGTGGTTGGTCGCG TTGCCGTTGTTGGCGGAGTTGACGAGCCCCATGAACTGCCCCGGCAGCGCCGAGGTGAGGTTCT TGCTCTTGGCGATGATGAACGCCATGCCGTGGCTGCTCAGGTCCTCGAACGCGCCGATGATGCC GATGACGAAGGCCGTGGAGAAGGACTGCATCGCCGTGCTGTTGGGCCCCCTCTGGAACTGGAGC GGCGACGGGAAGAAGGCGTGGCCCTTGAGCTGGTTCGTGCCGTTGGTCAGCATGAGCAGCCCGT TCGAGGTCACCGTTGCCATGCCGTCGAAGCTGAGGTTGGCGCCGGTGAACCCGTTGAAGACGAA CCGCTCGTCGGTCGCCGCCGCCGGGCGGAGGCAGCCGAGGCCGAGGAAGAGGAGCAGGACAAAG AACGGCATTTCTGGTTTGGGAAGCACCATGCCCTGCACTTCGCCTAGTGCTGAGCTTCAATCAG TGCCTCACCAAATGCCCAAGCTTTGCTGCTTCTATTGTGTCAGTCAAGTCACGGCCCCGGTGTT TAACTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.323821043

Conservation Information
Conserved circRNAs	NA
PMCS	0.323821043

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os04g0531300_circ_igg.1

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