Detail information of BGIOSGA011981_circ_g.2


General Information
CircRNA Name BGIOSGA011981_circ_g.2
ID in PlantcircBase osi_circ_013950
Alias Chr03:4145542_4146797(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 4626359-4627607  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA011981
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA011981-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGTGCCAATCCTTTAGCAAAGGAACTAAACATCAAGGAGCTTTACAATTTGCAAAGCAGACT
AGCTCAGGAAAAGGCTAGAGATGTATATCGCCAAAGgcagaataaagttgatggacgattcaat
cagaatctgaggtcactgtcgtttggacattcaagtcctccatcaccagcatcatatggtcaaa
atggtctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAGAATAAAGTTGATGGACGATTCAATCAGAATCTGAGGTCACTGTCGTTTGGACATTCAAGT
CCTCCATCACCAGCATCATATGGTCAAAATGGTCTTGCAAACTATAACAAAGAAGCTTTTGGTC
TGGCAAACAATACATATAGATCCCACTCAGCTGTACTCGCAGATGATATACTTTCCCCTTCAGC
TGGTCGGGAACATATTTCTCTGGATGCTCCTAGGGGGAGGTACAATACAACTAATTTGCCTGTT
TCTGGTCTTGGTTCAAGCAGAGGCTCTCAGTTCATGGCAAGCTCATTCAATGGCAATCATGACA
TAGTCTCAAACAACACCCTGCAAAATATAGCTGGAGTTCAAACAGGACCTGCTTGGCTTGAAGC
TGATACTGCAGGTAGTGTTGAATTATAATGCATGTTTTTTCATGGACCTATCACAGCATACATG
CCTATTTACCTTATGGTTGAACTTGTCTGTGATGACAGCAAACATGTTTTTGGAATCAAAGGAT
GAAGCTCATGATTTTGCAAGCCTACGGCATGCGCTTCTGGAACAGGTGCATATGCTCTACTTTT
CGATACTAAATTATTGTTACATATTTTAAAACCAAATTATTGTGCATGTGAGCATGTTGTTAAA
TAAATATTGACAGTATTATTATTCTATTTTAATGGGACTAAGGTTGTAAGTATCGACAATATTA
GTAATCATCAAGCCCTAAAAAGTTGTAATTGAGTTACATGGTTGGTAACATAAAAATACTAGCA
AGAAAACTACTTCATATCTTGTCAATGTGACAAAAAAGTGCTCTGTATCAAATATTTCACAGAA
TGAGTTCTTTTGGTGATGTGGTAGGCTTATATGTTATATGACTAGTTTTCAAATCCAATTTGGT
ATGACTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGTGATGGTGGCACAAGATTATTCATTGG
ATTTTATTGACAATACATGAATATTAGATATGGTTTTGGAATTGTTGTTTATAGTACTCAAATA
TTATGCCTCAGGAAGATACCTTGAATTATGTAAACAACTTACTTTTTCTTGGTTCTTTTAATGT
ATTCGCTCACAGTCCGCTGCTATGCATTCAAACTTTTGACAGGATAGGCAGGTTCTTTTAACTG
GTGCCAATCCTTTAGCAAAGGAACTAAACATCAAGGAGCTTTACAATTTGCAAAGCAGACTAGC
TCAGGAAAAGGCTAGAGATGTATATCGCCAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021