Detail information of BGIOSGA024875_circ_g.1


General Information
CircRNA Name BGIOSGA024875_circ_g.1
ID in PlantcircBase osi_circ_007009
Alias 7:1686258|1686480
Organism Oryza sativa ssp. indica
Position chr7: 1686258-1686480  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA024875
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA024875-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGACTATTCTTAAACCCTTCAGTGGCTAAATATAGGTCCTTAAATGAGAACCTATGTGGTCCA
AACTCAATTTCCCAATCTTCTCGCAACTCAGCATACctcagcaacaaattcccttatgccttgt
ctcgactcatgggacaccctcttcactgcaatttgtgacttagacttggaaagaagacccttgt
acaccctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGCAACAAATTCCCTTATGCCTTGTCTCGACTCATGGGACACCCTCTTCACTGCAATTTGT
GACTTAGACTTGGAAAGAAGACCCTTGTACACCCTTCCAAATCCTCCAGTGCCTAAGAGATGAC
TATTCTTAAACCCTTCAGTGGCTAAATATAGGTCCTTAAATGAGAACCTATGTGGTCCAAACTC
AATTTCCCAATCTTCTCGCAACTCAGCATAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021