Plant Circular RNA Database

Detail information of 2_circ_ag.10

			
						 General Information
					
						CircRNA Name
						2_circ_ag.10
					
						ID in PlantcircBase
						ath_circ_018688
					
						Alias
						Chr2:19005209|19007294
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 19005209-19007294  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						CIRCexplorer; CIRI
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							2_circ_ag.4 AT2G46070_circ_g.1 AT2G46090_circ_g.1 AT2G46090_circ_g.2 AT2G46090_circ_g.3 AT2G46100_circ_g.1 AT2G46100_circ_g.2 AT2G46140_circ_g.1 AT2G46170_circ_g.1 AT2G46180_circ_g.1 AT2G46180_circ_g.2 AT2G46180_circ_g.3 AT2G46180_circ_g.4 AT2G46180_circ_g.5 AT2G46180_circ_g.6 AT2G46180_circ_g.7 AT2G46180_circ_g.8 AT2G46192_circ_g.1 AT2G46192_circ_g.2 ENSRNA049495738_circ_g.1 AT2G46200_circ_g.1 AT2G46225_circ_g.1 AT2G46225_circ_g.2 AT2G46225_circ_g.3 AT2G46225_circ_g.4 AT2G46230_circ_g.1 AT2G46230_circ_g.2 AT2G46230_circ_g.3 2_circ_igg.4 AT2G46240_circ_g.1 AT2G46240_circ_g.2 AT2G46260_circ_g.1 AT2G46260_circ_g.2 AT2G46270_circ_g.1 AT2G46270_circ_g.2 AT2G46270_circ_g.3 AT2G46270_circ_g.4 AT2G46280_circ_g.1 2_circ_ag.2 AT2G46280_circ_g.3 2_circ_ag.4 AT2G46280_circ_g.5 2_circ_ag.6 2_circ_ag.7 AT2G46280_circ_g.8 2_circ_ag.9 AT2G46280_circ_g.11 2_circ_ag.12 AT2G46320_circ_g.1 AT2G46320_circ_g.2 AT2G46320_circ_g.3 AT2G46320_circ_g.4 AT2G46330_circ_g.1 AT2G46340_circ_g.1 AT2G46340_circ_g.2 AT2G46340_circ_g.3 AT2G46340_circ_g.4 AT2G46340_circ_g.5 AT2G46340_circ_g.6 AT2G46340_circ_g.7 AT2G46340_circ_g.8 						
					
						Support reads
						4
					
						Tissues
						seedling
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	2_circ_ag.10
ID in PlantcircBase	ath_circ_018688
Alias	Chr2:19005209\|19007294
Organism	Arabidpsis thaliana
Position	chr2: 19005209-19007294 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	CIRCexplorer; CIRI
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	2_circ_ag.4 AT2G46070_circ_g.1 AT2G46090_circ_g.1 AT2G46090_circ_g.2 AT2G46090_circ_g.3 AT2G46100_circ_g.1 AT2G46100_circ_g.2 AT2G46140_circ_g.1 AT2G46170_circ_g.1 AT2G46180_circ_g.1 AT2G46180_circ_g.2 AT2G46180_circ_g.3 AT2G46180_circ_g.4 AT2G46180_circ_g.5 AT2G46180_circ_g.6 AT2G46180_circ_g.7 AT2G46180_circ_g.8 AT2G46192_circ_g.1 AT2G46192_circ_g.2 ENSRNA049495738_circ_g.1 AT2G46200_circ_g.1 AT2G46225_circ_g.1 AT2G46225_circ_g.2 AT2G46225_circ_g.3 AT2G46225_circ_g.4 AT2G46230_circ_g.1 AT2G46230_circ_g.2 AT2G46230_circ_g.3 2_circ_igg.4 AT2G46240_circ_g.1 AT2G46240_circ_g.2 AT2G46260_circ_g.1 AT2G46260_circ_g.2 AT2G46270_circ_g.1 AT2G46270_circ_g.2 AT2G46270_circ_g.3 AT2G46270_circ_g.4 AT2G46280_circ_g.1 2_circ_ag.2 AT2G46280_circ_g.3 2_circ_ag.4 AT2G46280_circ_g.5 2_circ_ag.6 2_circ_ag.7 AT2G46280_circ_g.8 2_circ_ag.9 AT2G46280_circ_g.11 2_circ_ag.12 AT2G46320_circ_g.1 AT2G46320_circ_g.2 AT2G46320_circ_g.3 AT2G46320_circ_g.4 AT2G46330_circ_g.1 AT2G46340_circ_g.1 AT2G46340_circ_g.2 AT2G46340_circ_g.3 AT2G46340_circ_g.4 AT2G46340_circ_g.5 AT2G46340_circ_g.6 AT2G46340_circ_g.7 AT2G46340_circ_g.8
Support reads	4
Tissues	seedling
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGGGCACCAAACTTGAAAGTGAACAATTCTTTGCCAGATTTCACATCCCACAGCTTTGCAGTCT
GATCAGCACTACCAGTGATCAATCTAGACGAGTCTCcgggagacatcacagcaccaaacagcac
cgttgtgaccacggtaagttccaaggcgctcgccgttatcggcaaaccagagggtgggtgtgtg
gtccttgg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CGGGAGACATCACAGCACCAAACAGCACCGTTGTGACCACGGTAAGTTCCAAGGCGCTCGCCGT
TATCGGCAAACCAGAGGGTGGGTGTGTGGTCCTTGGCGCAGGAGAAAAGCAGATCTCCTTCTCT
GTTGTACCTCAGAAACGTCAATGGACGTTCATGTCCCTTCATCAGGATCGGCCTCATCTTCAGT
TTCTTAGGGTTTGATGCGAATCTTTGAAACAGATACGAAATCGAATCAATCAAAAGACAAGAAA
AATAATTGAAGAAACGATTACGGAAAACGGCTTTCTTCTTCACCTGTTCACTTGAAGACGAGAG
AGACGACGAGGAAGAAGTGCAAAAACCCTAGGAAATCAACTTTGTCCTCTCTTTTGACACTTTT
ACCCTTTTGTAATTTTTTAAATTACTCGAGATGCCACAGTTTAGCAAAGCTCAGTGGCTTCAGC
GTTTTTAGCTTCTTCCCTATTTGATGAGTTCGAACCTCGCCCGTTGCGCCTATTTTGTTTTTTT
CCTTTCTCAAAAGCAGTTTCATACGTTTTTTTTTTGTGGGTGCATATGTCTATTTGAAAAGACA
AACAACAAGCTTTATCATCAAAGTAGTATATTGGTAATTTGGTAGTACATCAATTCTGAAAATG
TTAAAAAGAGAGAAAATATTATGTGGAATGATGAAAAAATGGAAAGACATGTTCAAAGAATCTA
AATCTTGATGTTGAAGTAATTGGAGTCAAAATGATGCAGTCTCACGTAGCCGTCTTCACCTCCA
CTAGAGAAACTGAAAATACATTCCAAAAAACACTCAGCAACAAAGCCTAAAAAACACTCTCATC
AACTGAGGATTGTATCAATCAATCAAAATCAAATTTTGTTAGTTTACCTCTTCCCATCAGGACT
GAATGCCAAAGCATTAATAGGTCCAAAATGACCTTTCACGCCACCAATTTCCTCTTGCAGAATC
TATATATTATAAGACCAAATACACAGTTACATATCTCTTTCCAGGTTACAAGTTTTTAAATAAA
ACTGTTTTACTGCAACACTAACCGTGTCGTAAAACTTAGCTTCAAACTTCCCAGCACGATGATC
AGTGGTAGTCACAGCTGATGCATCTTGACCACCTCCAAGCACAACCTAAAAGAGCGAGAGCAGA
AACATTCACAAAGATAACATCAAGACTTGTTGCTTTTGGGAACCGAATTTGAATTTCAAGAAGC
ATTAGTGCATACATGGTTGAGAAGTGGAGACATGGCGACAGCATTTACAGGCACCACAGTGGTG
TAAGTCTTAATAAGAGTCAGCGTTCTCATGTCCCAAAGCTGAAAGAATCAACAAAAAGAACACT
CTATTAGATGATTTATCTCTATATGTAATATGTATAGAGCATATTTTTGAAACAAGTAAAAGAA
AGAAGCACATGCCTTTGCAGTTTTGTCATGTGAACCTGTAAGGAAGTGAGAGTCATCAGCTGCT
TTGCAGAGGGATGTAATGGCCTCCTTGTGACCCACTTCCTCATCTGATTGCTTAAGCAATTTTC
CAGTCTAGTAACAATGGCAGTAGCACCACATAAGGTTTAAGCTAATAAAAAAAAAAAGAGAGAT
ATTGATAGACAAAAGAAAGGCCTTAAGAAAGTTGAAATACCTCTGCATCCCAGATTCTGATAGC
AGCATCTTCACCACCACTAACAATGGTTTGGTTCAGGGGACCCCAAACAGCTCTATTGATCTTC
TTCTTTCCATCAGGACTTTGAAGGACAAGCACAGAATCACCAACCTCTACATCAATTACATTAA
ATCAATTCCTTTTACCCATACAAAAAAGACATAGGCTAAAAAACATAAGTAGATTTTAACTTAG
AATTGACAACTTACGGTCTTCGGGATCTTCTGCAATGCGTTTGACATGAATAGCAGAGGAAGTT
CCCACGAAGTGATCAGTGGTAATCACTGCAAGATGATCACCAACAGAGAAATCCACAGACCTTG
CAGGGGCACCAAACTTGAAAGTGAACAATTCTTTGCCAGATTTCACATCCCACAGCTTTGCAGT
CTGATCAGCACTACCAGTGATCAATCTAGACGAGTCTC
						
					

			
		

Sequences
Splice junction sequence	GGGGCACCAAACTTGAAAGTGAACAATTCTTTGCCAGATTTCACATCCCACAGCTTTGCAGTCT GATCAGCACTACCAGTGATCAATCTAGACGAGTCTCcgggagacatcacagcaccaaacagcac cgttgtgaccacggtaagttccaaggcgctcgccgttatcggcaaaccagagggtgggtgtgtg gtccttgg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CGGGAGACATCACAGCACCAAACAGCACCGTTGTGACCACGGTAAGTTCCAAGGCGCTCGCCGT TATCGGCAAACCAGAGGGTGGGTGTGTGGTCCTTGGCGCAGGAGAAAAGCAGATCTCCTTCTCT GTTGTACCTCAGAAACGTCAATGGACGTTCATGTCCCTTCATCAGGATCGGCCTCATCTTCAGT TTCTTAGGGTTTGATGCGAATCTTTGAAACAGATACGAAATCGAATCAATCAAAAGACAAGAAA AATAATTGAAGAAACGATTACGGAAAACGGCTTTCTTCTTCACCTGTTCACTTGAAGACGAGAG AGACGACGAGGAAGAAGTGCAAAAACCCTAGGAAATCAACTTTGTCCTCTCTTTTGACACTTTT ACCCTTTTGTAATTTTTTAAATTACTCGAGATGCCACAGTTTAGCAAAGCTCAGTGGCTTCAGC GTTTTTAGCTTCTTCCCTATTTGATGAGTTCGAACCTCGCCCGTTGCGCCTATTTTGTTTTTTT CCTTTCTCAAAAGCAGTTTCATACGTTTTTTTTTTGTGGGTGCATATGTCTATTTGAAAAGACA AACAACAAGCTTTATCATCAAAGTAGTATATTGGTAATTTGGTAGTACATCAATTCTGAAAATG TTAAAAAGAGAGAAAATATTATGTGGAATGATGAAAAAATGGAAAGACATGTTCAAAGAATCTA AATCTTGATGTTGAAGTAATTGGAGTCAAAATGATGCAGTCTCACGTAGCCGTCTTCACCTCCA CTAGAGAAACTGAAAATACATTCCAAAAAACACTCAGCAACAAAGCCTAAAAAACACTCTCATC AACTGAGGATTGTATCAATCAATCAAAATCAAATTTTGTTAGTTTACCTCTTCCCATCAGGACT GAATGCCAAAGCATTAATAGGTCCAAAATGACCTTTCACGCCACCAATTTCCTCTTGCAGAATC TATATATTATAAGACCAAATACACAGTTACATATCTCTTTCCAGGTTACAAGTTTTTAAATAAA ACTGTTTTACTGCAACACTAACCGTGTCGTAAAACTTAGCTTCAAACTTCCCAGCACGATGATC AGTGGTAGTCACAGCTGATGCATCTTGACCACCTCCAAGCACAACCTAAAAGAGCGAGAGCAGA AACATTCACAAAGATAACATCAAGACTTGTTGCTTTTGGGAACCGAATTTGAATTTCAAGAAGC ATTAGTGCATACATGGTTGAGAAGTGGAGACATGGCGACAGCATTTACAGGCACCACAGTGGTG TAAGTCTTAATAAGAGTCAGCGTTCTCATGTCCCAAAGCTGAAAGAATCAACAAAAAGAACACT CTATTAGATGATTTATCTCTATATGTAATATGTATAGAGCATATTTTTGAAACAAGTAAAAGAA AGAAGCACATGCCTTTGCAGTTTTGTCATGTGAACCTGTAAGGAAGTGAGAGTCATCAGCTGCT TTGCAGAGGGATGTAATGGCCTCCTTGTGACCCACTTCCTCATCTGATTGCTTAAGCAATTTTC CAGTCTAGTAACAATGGCAGTAGCACCACATAAGGTTTAAGCTAATAAAAAAAAAAAGAGAGAT ATTGATAGACAAAAGAAAGGCCTTAAGAAAGTTGAAATACCTCTGCATCCCAGATTCTGATAGC AGCATCTTCACCACCACTAACAATGGTTTGGTTCAGGGGACCCCAAACAGCTCTATTGATCTTC TTCTTTCCATCAGGACTTTGAAGGACAAGCACAGAATCACCAACCTCTACATCAATTACATTAA ATCAATTCCTTTTACCCATACAAAAAAGACATAGGCTAAAAAACATAAGTAGATTTTAACTTAG AATTGACAACTTACGGTCTTCGGGATCTTCTGCAATGCGTTTGACATGAATAGCAGAGGAAGTT CCCACGAAGTGATCAGTGGTAATCACTGCAAGATGATCACCAACAGAGAAATCCACAGACCTTG CAGGGGCACCAAACTTGAAAGTGAACAATTCTTTGCCAGATTTCACATCCCACAGCTTTGCAGT CTGATCAGCACTACCAGTGATCAATCTAGACGAGTCTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.161256683

Conservation Information
Conserved circRNAs	NA
PMCS	0.161256683

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to methyl jasmonate

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to methyl jasmonate

			
						 Other Information
					
						References
						Zhang et al., 2020

circRNA

Detail information of 2_circ_ag.10

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