Detail information of Zm00001d014040_circ_g.1


General Information
CircRNA Name Zm00001d014040_circ_g.1
ID in PlantcircBase zma_circ_001935
Alias circ896
Organism Zea mays
Position chr5: 30335951-30341328  JBrowse»
Reference genome AGPv4.38
Type   ie-circRNA
Identification method CIRI
Parent gene Zm00001d014040
Parent gene annotation WD repeat-containing protein 91-like protein
Parent gene strand -
Alternative splicing Zm00001d014040_circ_g.2
Support reads 2
Tissues seedling leaves
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered Zm00001d014040_T001:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTAAGGATGCTTGTAGCTCTGCCAATTTATTATTCAGTTGTTTTATGTCATTCTTGAGGGATT
TGATGGTATTCTTTTCACTACTAATTCTCATAAGAGccaaacatgtgaatcattccatctgtag
cagaagctgccaaaatcttcccattgtgattgaagcaaagagaagtaatggcaggtggatcctc
accaagag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.011853917
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b