Detail information of 3_circ_igg.8


General Information
CircRNA Name 3_circ_igg.8
ID in PlantcircBase ath_circ_026293
Alias 3:17169794-17174520
Organism Arabidpsis thaliana
Position chr3: 17169794-17174520  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT3G46614_circ_g.1 AT3G46614_circ_g.2 AT3G46614_circ_g.3 AT3G46614_circ_g.4 AT3G46614_circ_g.5 AT3G46614_circ_g.6 AT3G46614_circ_g.7 AT3G46614_circ_g.9 AT3G46614_circ_g.10 3_circ_ig.11 3_circ_igg.12 3_circ_ig.13 3_circ_ig.14 3_circ_igg.15 3_circ_ig.16 3_circ_igg.17 3_circ_ag.18 3_circ_igg.19 3_circ_igg.20 3_circ_igg.21 3_circ_igg.22 3_circ_igg.23
Support reads 1/2/1
Tissues seedling;root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTTGTGAAGTATGTATTGAGTAGAAATAGATAAACTTCACCTTATAACTCTAGCTTTTATCT
TGCATTTTGAATCATCACCGAGCTTCCCTGATATGTctgacctctcatatgctcttgctgcaaa
atcgtctctcatttgctcttggcaaggacctttgttctttacagaataaggatccactctctag
aattcaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGACCTCTCATATGCTCTTGCTGCAAAATCGTCTCTCATTTGCTCTTGGCAAGGACCTTTGTT
CTTTACAGAATAAGGATCCACTCTCTAGAATTCAAAGCATTTTGTTAGCAAACATTATGTGCAG
AGCAAAGCAGGATCCTAACACAACATACAAACAATATATAAAAACTACAAAATCAATGCAAAGA
AAATATATGGTAAGAATCTTACAGAGGCTGACTGGTTTTCATCTCTTGTTCTTTAAATCTTCAC
GGAACATGCTGTATAACGAAAAACCCGAATAGAAAACATAACCCTTCAAGTTAGAAAATATCAA
GAGAATGTCAACTGTTGTAAGAGGTGATGAAAAAATTTAATCACCTTAGCACTGAAGAATATAT
TTGTTGTCTCATATGCACGAGACTTTCCAAGAAGAAGAATCTGATCCCTGATTTCGTTAGTATT
GTACCATGGAAATCAAGATCTAGTAGAGAAATGTGATATGCCTTATTAGTTCTTGCAAGTTAAA
AACCATTCAAACACGTCATACATTTCCAAACAACATTGTATCAGTGTGTGTAATTTATATACCT
GGCCCTTCTTCTTTCGAGGAGACTGGATGGCTTTCTTAAAGTTGGTTCTTTTCCGCTTAAGAAT
CGTCTATCTTTGTACAAAACCATTATGTTAGCAGTCTATACACAAGACCATAATTTGTTTACAA
AAACTCTAAAAAGGGATGAAGATAGTTTATCTACCTGATCCTTCGTTTTTACGAGGCAATTGAA
TCACTTTCCTAAGTTTAGCTATTTTCATCTTAAGAGTTCTCCATCTTGATACAAAACCATTCTA
ATAGCAGTTACTAAGCATATAAGACTATAAATAAACCACATAAATAATGCTAATTAAGAAACTT
ATTGGAATTTATTGAGTTGGATCCAAGCTGGGATTCGACTGCTTTGCTCTTGTTGTTTCTGTTA
ATCTTGACAAGGAAACAATGTCCACAAAACATGTTTATTACGTATGATAAATATTCTTTGTGAA
ATAAGTATTAATAAGAAAATTTGTATGAAGAAACTTCACCTTGAAACTTGTGTTTTTCTTTAAG
TTTGAAGTATCACTAAGTATCCCTTCACATGAAATCACATGATGAAACATATCTAAGTAAATAT
ATTTATTTTTGTATGACACCGTTTGAGCTTGTGTGGCTTGGATTTCATTTTTAGAGTAGCATAA
CTACTTAGATTCAATGTGACCAAAAAAAAATTAATAGTTGTAAAAGACTAAAAAAGAAAGAGAA
AGAAATTTTCCCTGAAATTGACATAGCAACAAAATCCCAAAGTTTTTAACTATAAAGAAAAATA
TTGATTGTTTTTTTTCGTTCTTTTATGTGTCTAGTTTTGTGTTGTGCTGTATTTTATTTCTTGT
GTTATGTGGAGTTTGAGCTTTGTTTCGTTTGAGTATGTTTACAATTTTGTTTGCGTGTGATGTG
ATTTTTTTTGTAGAGTTTGAGTTTTGTGTGTTTATGTTTGAGTTTATGTTGTCTTTGGGTGTGT
TTTGAGTTTGAGTGTTTTCCGTGTTTGTGAAAGTGTGTGTTTTCAGATATTGTGAGTAACCAAA
ACAAAGCCAAGATAGCTATGCATGACACAATTGACATGAGAATAAAGTGAGAGATATCTGACCT
CCCACATGCTTTACCTTCGAAATGTTTTGTTCTTTGGACCTCAAAGATATCTCCATGAAGCAGG
GCACAAAACCCCTCATTTTCTCTTGGCTACTGAATCAAAGTTTCACCTGAAAGTACATCATACA
AATAGGACAATAAAATGAAACCACAAAATCACTGCCAAGAAAGAAAAAAACTTGGTAAGAGTCT
TACAGATCCAAAATCTGACTGGTTGCTAATATTTTCTACTTTTAATCTTGACGGATAATGCGTT
AACGACGAATACAACAGAAAAACATAACTATCAAAGTTAGAAAAACAATCTCATTTTAAGAACA
CATTAAGGAGACTGCATCATCTTAGGAACACATATAATTTAAAGAGTGCTTTAAAACTTACATC
AATGTCCCCGTCTCCAAATTGAGATATGAATTGCCACTTGATTGCTGAATCATATGACCACAAG
ACTGATAAGAGCTTGAAACATTAACATGCAATTATTGAAACACGGGATATCGAGATAAACAATG
TATGTGATGCCATAGAATCTTCTTGTAAGAATATAACAATTAACCATTTTTTCCGAATCAATCT
CCACAGAGCCAAAACGATACAATAAAAAACATTAGTTTGAGTAACCCTAACAAGCCAAGGTATC
TCATCAAATGCAAATAACCTGTAGGGACGAATTAGTCACCTTAGCACTGAGAAAATATTTGGTT
GTTCATGTGAGAAAGACTCTCCAACAGCTAGAATCTGATCCCTGACTTCGTTTGTATTGTACTT
GGAGATCGAGATCTAAAACAGAAATATGATATGTTTTATTAGTTTCTACAAGTTATAGATCACT
TAAACACATCAAACATTTTGAGAAAGAAACATTATAAGTGTTTATCTACCTGACCCTTCTTCTT
TAACGGAGACTGAATGGCTTTCTTAAGTTTGGTTCGTTTCCGATCAAGAATCTTCTATCTTGGT
ACAAAACTATTATATTAGCAGTATACTTAATACACAAGACCATAGAAAAACTACAAAGAGTTTG
AAAAGAGACAAAGATAGTTTTTCTACCTGACCCTCCTTTAACCGAGGCGACGAAATCACTTTCC
CAATTATTTTTCACCACAAGAGTCGTACTCCATCTTGAGACAACACCATTCATATAGCAGTTAA
TAAATACATACGACTACTAAATAAAACTACAAAACAGTGCTAATAAAGAAACTTGCTGGAAATC
TTACTGACTAATCCAGTGATCCCACTGTTTGGCTCCTACTATTTCTGTTTATCTTGATAAGGAC
ACAATGTCCACAACTGAAATGTTGAACATGTTGATATATGAAAACCAGTTTTTACAACACGATT
TGTCTTCTGTGAAGTATGTATTAATAAGAAAATGTGTATGAGAAAAAATCGAGAAACTTCACCT
TAAAACTCTAGTGTTTTTTCCTTCGATTTTGAATCATCACAGAGTATCCCTTCACAAGAAATGA
CAGTATGAAACATATGTAAGTAAATGTATTGATTACCTCTTTAGTTTTGTATGCAGGACACTGT
TTTCGCTTGTACTGGCTTGAATTTCACTTTGAGAGCAGCATAAAAAGTAATTAGATTCAATGTG
ACAAAATAATTGATAGTTGTAAAAGACAAAGAAATGAGAAGAGAACGATACTTCACCTGAAATT
GACTAGGCAACTGAATCTCAAACTTCTTACCAATACAAAAAGATATTGATCGTGAAGTTTTGTT
TTTTTGTCCCTTTTTTGGTGTCTACTTTTGTGGTGTGCTGTATTTTGTTTCTTTTGTTATGTTG
TGTTTGAGTGTGTTTAGATTTTTGTTACGTGAGATGTGCTTGTTTGAGTTTTGTGTGTATGTTT
GAGTTTTGTTTTGTGTTTGGGTGTGTTTTGATTTAGAGTGCATTGTGATGGAGTAATTTTTCGT
GTCTGTGAAATTGTGTGTTTTAAGATAGTGTGAGTAACCCAAACAAAGCCTAGACAACTTGGCT
AATCAAATGCAAACACCCTGTTGAGATGATCCTGAGAACCTATGCATGATACAATAGACATGAG
AATAAATGAAGCGATATCTAACCTCTCATATGCACTTGGTTACATATTCACCTTCGAAATTTTG
TTCTCTTGACCTGAAAATTACCAGCAAGAGGCCGGAAACACGACCCCTCGTTTGCCTCTTGGCT
ACTAAACCAAAATTTCACCTGAAAGTACAACACAAACAATAAATTGAAACCACAAATCAATGCC
AAAATAAATAAAAAAACACTAGGTAGAGTCTTACTGAGCCAAAATCTGACTGCATGCTACTTTA
CAGATCATGCTTTATAATGAAGAACCCAACTGAAAACATAACTCTTCAAGTTAGAAAAACAATC
TAACTCCAGAGGAATATAAACTGCAATATCGTACCTTGGAAATCGAGATCTATATGATATGTTT
TTTTAGTTGATATCACTTAAACACGTTAGAAATTAGTAGAAAACATTGTATCAAAGTGTGTTTA
TCTACCTGACCCTTCTTTTTACGGAGAGATTGAATAGCTTTCTTAAATTTGGTTCTTTTCCACT
TAAGAATCGCCTATCCTGGTACAGAACCATTATGTTAGCAGTATACACAAGACCATTAGAAAAC
TACAAAAACTCTGAAAAGAGATGAAGGTAGTTTATCTACCTGATATTTCCTTTCTCCGAGGCAA
CTGAAGTACTTTCCTAAGTTTAGTTATATTCAGCTTAAGGGTCGTCCATCTTGATACAAAATCA
TTCTAATAGCAGTAACTATATACATAAGACTGTAAAATTAAATCACAAAATAATGCTAATTAAG
AAACTTACAAATTCTGATCCAAGCCTGATTCGACTTCTTTGCTCCTGTTGTTTCTGTTAATCTT
GACAAAGGAAACAATGTCCACAACTCAAATATTGAACATGCTTATTAAGTTTGAATAAAACAAG
TTTTTACGAGTGCATTTGTCCTTTGTGAAGTATGTATTGAGTAGAAATAGATAAACTTCACCTT
ATAACTCTAGCTTTTATCTTGCATTTTGAATCATCACCGAGCTTCCCTGATATGT
Conservation Information
Conserved circRNAs NA
PMCS 0.090042002
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020