Plant Circular RNA Database

Detail information of Os05g0172000_circ_igg.1

			
						 General Information
					
						CircRNA Name
						Os05g0172000_circ_igg.1
					
						ID in PlantcircBase
						osa_circ_026832
					
						Alias
						Os05circ04254/Os_ciR781, 
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 4309010-4309768  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						CIRI, SMALT, Segemehl, circRNA_finder, find_circ, CIRI-long
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							NA						
					
						Support reads
						3/28/5
					
						Tissues
						leaf and panicle/root/seed, leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os05g0172000_circ_igg.1
ID in PlantcircBase	osa_circ_026832
Alias	Os05circ04254/Os_ciR781,
Organism	Oryza sativa
Position	chr5: 4309010-4309768 JBrowse»
Reference genome	IRGSP-1.0.38
Type	igg-circRNA
Identification method	CIRI, SMALT, Segemehl, circRNA_finder, find_circ, CIRI-long
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	NA
Support reads	3/28/5
Tissues	leaf and panicle/root/seed, leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATACCTGAGAAGATGTCTGACTGCAGCCAAGTGTTCTTCGGTTCCTTCTGAGAATGCATTGTT
GTTGCTCTGCTTCAGGCTCAACCGCCCAAGTGCAACgtggcacacatactgaatttgattgtga
tctgaagagcatttctttgtcagtaatcgagttcgctgaaataactttgatttattaattacca
gctcgtcg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 217
Transcript exons: 4309010-4309149,4309692-4309768
GTGGCACACATACTGAATTTGATTGTGATCTGAAGAGCATTTCTTTGTCAGTAATCGAGTTCGC
TGAAATAACTTTGATTTATTAATTACCAGCTCGTCGAGCACAACCTGCAAAAACATATCTGAAA
TTTCAATTCAAAGCAGCCAAGTGTTCTTCGGTTCCTTCTGAGAATGCATTGTTGTTGCTCTGCT
TCAGGCTCAACCGCCCAAGTGCAAC

Transcript length: 421
Transcript exons: 4309010-4309072,4309156-4309297,4309389-4309509,4309674-
4309768
GTGGCACACATACTGAATTTGATTGTGATCTGAAGAGCATTTCTTTGTCAGTAATCGAGTTCGC
TGGTACAAAAAGCTGAGATACGATTGGCAGTCAAAACTAAGTTTTTTCATTTCGCTTGTTAAGG
AAATGCTCGGTGAATCAGAATCTCCAGTAGAGAAGGTGTTTGGAGGAGCACGATTAAACCAACA
GAAATCCCTCTCCCTGTTAACCAACACACCTGCCTGCCTCCACATCCTTCAGTTCAGCAAGAAG
CCATATGACCATATCAAGCTGCAGCGAAATATTCATCCTCACAGATGATAGATTCACCACTTTC
TCCTTCCTGAGAAGATGTCTGACTGCAGCCAAGTGTTCTTCGGTTCCTTCTGAGAATGCATTGT
TGTTGCTCTGCTTCAGGCTCAACCGCCCAAGTGCAAC
						
					

						Genomic sequence
						
							GTGGCACACATACTGAATTTGATTGTGATCTGAAGAGCATTTCTTTGTCAGTAATCGAGTTCGC
TGAAATAACTTTGATTTATTAATTACCAGCTCGTCGAGCACAACCTGCAAAAACATATCTGAAA
TTTCAATTCAAATAGGACCTGGTACAAAAAGCTGAGATACGATTGGCAGTCAAAACTAAGTTTT
TTCATTTCGCTTGTTAAGGAAATGCTCGGTGAATCAGAATCTCCAGTAGAGAAGGTGTTTGGAG
GAGCACGATTAAACCAACAGAAATCCCTCTCCCTGCATGTTGTTCATCAAAATTTCAGATCAGG
ACATCAACTTCTAAACCAAAAAATTTGATTCAGTTTGGGATTTTGGGTCAAATGAGCACCTGTT
AACCAACACACCTGCCTGCCTCCACATCCTTCAGTTCAGCAAGAAGCCATATGACCATATCAAG
CTGCAGCGAAATATTCATCCTCACAGATGATAGATTCACCACTTTCTCCTTCCTGAACAACCAG
CAGATAGGACTTTATACAAAGAATAGAGCTTTTCTTCCAATCATCAACATCCCCAGCTATGTCG
CTATCACTGTAGCTGACAAGCCGAAGATCTCCACACTCCTTATAGCTGCACCAATAGTCAGTCT
CTGCTAAATAGCAGTAGTACATACCTGAGAAGATGTCTGACTGCAGCCAAGTGTTCTTCGGTTC
CTTCTGAGAATGCATTGTTGTTGCTCTGCTTCAGGCTCAACCGCCCAAGTGCAAC
						
					

			
		

Sequences
Splice junction sequence	CATACCTGAGAAGATGTCTGACTGCAGCCAAGTGTTCTTCGGTTCCTTCTGAGAATGCATTGTT GTTGCTCTGCTTCAGGCTCAACCGCCCAAGTGCAACgtggcacacatactgaatttgattgtga tctgaagagcatttctttgtcagtaatcgagttcgctgaaataactttgatttattaattacca gctcgtcg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 217 Transcript exons: 4309010-4309149,4309692-4309768 GTGGCACACATACTGAATTTGATTGTGATCTGAAGAGCATTTCTTTGTCAGTAATCGAGTTCGC TGAAATAACTTTGATTTATTAATTACCAGCTCGTCGAGCACAACCTGCAAAAACATATCTGAAA TTTCAATTCAAAGCAGCCAAGTGTTCTTCGGTTCCTTCTGAGAATGCATTGTTGTTGCTCTGCT TCAGGCTCAACCGCCCAAGTGCAAC Transcript length: 421 Transcript exons: 4309010-4309072,4309156-4309297,4309389-4309509,4309674- 4309768 GTGGCACACATACTGAATTTGATTGTGATCTGAAGAGCATTTCTTTGTCAGTAATCGAGTTCGC TGGTACAAAAAGCTGAGATACGATTGGCAGTCAAAACTAAGTTTTTTCATTTCGCTTGTTAAGG AAATGCTCGGTGAATCAGAATCTCCAGTAGAGAAGGTGTTTGGAGGAGCACGATTAAACCAACA GAAATCCCTCTCCCTGTTAACCAACACACCTGCCTGCCTCCACATCCTTCAGTTCAGCAAGAAG CCATATGACCATATCAAGCTGCAGCGAAATATTCATCCTCACAGATGATAGATTCACCACTTTC TCCTTCCTGAGAAGATGTCTGACTGCAGCCAAGTGTTCTTCGGTTCCTTCTGAGAATGCATTGT TGTTGCTCTGCTTCAGGCTCAACCGCCCAAGTGCAAC
Genomic sequence	GTGGCACACATACTGAATTTGATTGTGATCTGAAGAGCATTTCTTTGTCAGTAATCGAGTTCGC TGAAATAACTTTGATTTATTAATTACCAGCTCGTCGAGCACAACCTGCAAAAACATATCTGAAA TTTCAATTCAAATAGGACCTGGTACAAAAAGCTGAGATACGATTGGCAGTCAAAACTAAGTTTT TTCATTTCGCTTGTTAAGGAAATGCTCGGTGAATCAGAATCTCCAGTAGAGAAGGTGTTTGGAG GAGCACGATTAAACCAACAGAAATCCCTCTCCCTGCATGTTGTTCATCAAAATTTCAGATCAGG ACATCAACTTCTAAACCAAAAAATTTGATTCAGTTTGGGATTTTGGGTCAAATGAGCACCTGTT AACCAACACACCTGCCTGCCTCCACATCCTTCAGTTCAGCAAGAAGCCATATGACCATATCAAG CTGCAGCGAAATATTCATCCTCACAGATGATAGATTCACCACTTTCTCCTTCCTGAACAACCAG CAGATAGGACTTTATACAAAGAATAGAGCTTTTCTTCCAATCATCAACATCCCCAGCTATGTCG CTATCACTGTAGCTGACAAGCCGAAGATCTCCACACTCCTTATAGCTGCACCAATAGTCAGTCT CTGCTAAATAGCAGTAGTACATACCTGAGAAGATGTCTGACTGCAGCCAAGTGTTCTTCGGTTC CTTCTGAGAATGCATTGTTGTTGCTCTGCTTCAGGCTCAACCGCCCAAGTGCAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006011* osi_circ_015952 						
					
						PMCS
						0.356280193

Conservation Information
Conserved circRNAs	osi_circ_006011* osi_circ_015952
PMCS	0.356280193

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017; this study

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Detail information of Os05g0172000_circ_igg.1

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