Detail information of AT2G18960_circ_g.4


General Information
CircRNA Name AT2G18960_circ_g.4
ID in PlantcircBase ath_circ_013753
Alias NA
Organism Arabidpsis thaliana
Position chr2: 8223178-8224691  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene AT2G18960
Parent gene annotation Plasma membrane ATPase
Parent gene strand +
Alternative splicing AT2G18960_circ_g.1 AT2G18960_circ_g.2 AT2G18960_circ_g.3 AT2G18960_circ_g.5 AT2G18960_circ_g.6 AT2G18960_circ_g.7 AT2G18960_circ_g.8 AT2G18960_circ_g.9 AT2G18960_circ_g.10 AT2G18960_circ_g.11 AT2G18960_circ_g.12 AT2G18960_circ_g.13 AT2G18960_circ_g.14 AT2G18960_circ_g.15 AT2G18960_circ_g.16 AT2G18960_circ_g.17 AT2G18960_circ_g.18 AT2G18960_circ_g.19 AT2G18960_circ_g.20 AT2G18960_circ_g.21 AT2G18960_circ_g.22 AT2G18960_circ_g.23 AT2G18960_circ_g.24
Support reads 14
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G18960.1:4
AT2G18960.3:4
AT2G18960.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCACTTCCTTCCATTCAACCCTGTGGATAAGAGAACTGCTTTGACTTACATCGACTCTGATGGT
AACTGGCACAGAGTCAGCAAAGGTGCTCCCGAGCAGgaaaaaattccgattgaggaagttttcc
agcagctaaaatgtacaagggaaggattgacaacgcaggaaggggaagacaggattgtgatatt
tggcccca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1242
Transcript exons: 8223178-8223297,8223391-8223627,8223712-8224473,8224569-
8224691
GAAAAAATTCCGATTGAGGAAGTTTTCCAGCAGCTAAAATGTACAAGGGAAGGATTGACAACGC
AGGAAGGGGAAGACAGGATTGTGATATTTGGCCCCAACAAGCTCGAAGAGAAGAAGGAAAGCAA
AATTCTGAAGTTTCTGGGGTTCATGTGGAATCCGCTTTCATGGGTTATGGAAGCTGCAGCTCTC
ATGGCCATTGCTTTGGCTAATGGTGATAATCGACCTCCGGATTGGCAAGATTTTGTGGGTATTA
TCTGTCTGCTTGTTATCAACTCCACAATCAGTTTCATTGAAGAAAACAACGCCGGAAATGCTGC
AGCTGCTCTCATGGCTGGTCTTGCTCCTAAAACCAAGGTTCTTAGGGATGGAAAATGGAGTGAA
CAAGAGGCTGCTATCCTTGTCCCAGGTGATATTGTTAGCATTAAACTTGGAGACATTATCCCAG
CCGATGCCCGTCTTCTTGAAGGAGATCCTTTAAAGGTTGATCAGTCTGCTCTAACTGGAGAGTC
CCTTCCTGTGACCAAGCACCCTGGTCAAGAAGTTTTCTCTGGTTCAACTTGTAAACAAGGAGAA
ATCGAAGCGGTTGTTATAGCCACTGGAGTTCACACCTTCTTTGGTAAAGCTGCTCACCTTGTGG
ACAGCACTAACCAAGTTGGGCACTTCCAGAAAGTTCTTACATCCATTGGAAACTTCTGTATCTG
TTCTATTGCTATTGGTATAGCGATTGAAATAGTCGTCATGTACCCTATCCAACACCGAAAGTAC
AGAGATGGAATTGACAATCTCTTGGTCCTCTTGATCGGTGGTATCCCCATTGCTATGCCCACGG
TCTTGTCTGTGACTATGGCTATCGGGTCTCACAGGTTGTCTCAGCAAGGTGCTATCACCAAACG
TATGACAGCCATTGAAGAAATGGCGGGAATGGATGTCCTTTGCAGTGACAAAACCGGGACACTA
ACCCTTAATAAATTGAGTGTGGATAAAAACTTGGTTGAGGTTTTCTGCAAGGGTGTGGAGAAAG
ATCAAGTTCTACTATTTGCAGCTATGGCTTCTAGGGTGGAGAACCAGGACGCTATTGATGCAGC
CATGGTTGGAATGCTTGCTGATCCGAAAGAGGCCCGAGCTGGAATCAGAGAGGTTCACTTCCTT
CCATTCAACCCTGTGGATAAGAGAACTGCTTTGACTTACATCGACTCTGATGGTAACTGGCACA
GAGTCAGCAAAGGTGCTCCCGAGCAG

Genomic sequence GAAAAAATTCCGATTGAGGAAGTTTTCCAGCAGCTAAAATGTACAAGGGAAGGATTGACAACGC
AGGAAGGGGAAGACAGGATTGTGATATTTGGCCCCAACAAGCTCGAAGAGAAGAAGGTTTGAGT
TTGACTTAGCATTGTTGTTTTATCATCATTGAAAGCTTTGGTTTTGTTTAACTCACGAGGTTGA
TCTTTCGTAAAAAAATATCAGGAAAGCAAAATTCTGAAGTTTCTGGGGTTCATGTGGAATCCGC
TTTCATGGGTTATGGAAGCTGCAGCTCTCATGGCCATTGCTTTGGCTAATGGTGATAATCGACC
TCCGGATTGGCAAGATTTTGTGGGTATTATCTGTCTGCTTGTTATCAACTCCACAATCAGTTTC
ATTGAAGAAAACAACGCCGGAAATGCTGCAGCTGCTCTCATGGCTGGTCTTGCTCCTAAAACCA
AGGTAATATGTTGGTGGATGCTGTGACATTACTGTACAAGATATTTCGAGACTTCTAGAGAGCT
TAACCTGTTTCTCTGTTTTCAGGTTCTTAGGGATGGAAAATGGAGTGAACAAGAGGCTGCTATC
CTTGTCCCAGGTGATATTGTTAGCATTAAACTTGGAGACATTATCCCAGCCGATGCCCGTCTTC
TTGAAGGAGATCCTTTAAAGGTTGATCAGTCTGCTCTAACTGGAGAGTCCCTTCCTGTGACCAA
GCACCCTGGTCAAGAAGTTTTCTCTGGTTCAACTTGTAAACAAGGAGAAATCGAAGCGGTTGTT
ATAGCCACTGGAGTTCACACCTTCTTTGGTAAAGCTGCTCACCTTGTGGACAGCACTAACCAAG
TTGGGCACTTCCAGAAAGTTCTTACATCCATTGGAAACTTCTGTATCTGTTCTATTGCTATTGG
TATAGCGATTGAAATAGTCGTCATGTACCCTATCCAACACCGAAAGTACAGAGATGGAATTGAC
AATCTCTTGGTCCTCTTGATCGGTGGTATCCCCATTGCTATGCCCACGGTCTTGTCTGTGACTA
TGGCTATCGGGTCTCACAGGTTGTCTCAGCAAGGTGCTATCACCAAACGTATGACAGCCATTGA
AGAAATGGCGGGAATGGATGTCCTTTGCAGTGACAAAACCGGGACACTAACCCTTAATAAATTG
AGTGTGGATAAAAACTTGGTTGAGGTTTTCTGCAAGGGTGTGGAGAAAGATCAAGTTCTACTAT
TTGCAGCTATGGCTTCTAGGGTGGAGAACCAGGACGCTATTGATGCAGCCATGGTTGGAATGCT
TGCTGATCCGAAAGAGGTATAACTCTAATCATTTTGAATTACTTCTTTAGTTTAGTGAAAGGTC
GAGAAAACAAGTTCTTAATTTCTTATGTTTCACTTGGATTTTCATAGGCCCGAGCTGGAATCAG
AGAGGTTCACTTCCTTCCATTCAACCCTGTGGATAAGAGAACTGCTTTGACTTACATCGACTCT
GATGGTAACTGGCACAGAGTCAGCAAAGGTGCTCCCGAGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.654413739
Functional Information
Coding potential Y
Potential coding position 8223421-8224688(+)
Potential amino acid sequence MWNPLSWVMEAAALMAIALANGDNRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGL
APKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHP
GQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTSIGNFCICSIAIGIA
IEIVVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEM
AGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRVENQDAIDAAMVGMLAD
PKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRVSKGAPEQEKIPIEEVFQQLKCTREGLT
TQEGEDRIVIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIALANGDNRPPDWQDFVG
IICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDII
PADARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHL
VDSTNQVGHFQKVLTSIGNFCICSIAIGIAIEIVVMYPIQHRKYRDGIDNLLVLLIGGIPIAMP
TVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVE
KDQVLLFAAMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNW
HRVSKGAPEQEKIPIEEVFQQLKCTREGLTTQEGEDRIVIFGPNKLEEKKESKILKFLGFMWNP
LSWVMEAAALMAIALANGDNRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKT
KVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQEV
FSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTSIGNFCICSIAIGIAIEIV
VMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMD
VLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRVENQDAIDAAMVGMLADPKEA
RAGIREVHFLPFNPVDKRTALTYIDSDGNWHRVSKGAPEQEKIPIEEVFQQLKCTREGLTTQEG
EDRIVIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIALANGDNRPPDWQDFVGIICL
LVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADA
RLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDST
NQVGHFQKVLTSIGNFCICSIAIGIAIEIVVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLS
VTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQV
LLFAAMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRVS
KGAPEQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017